Job Description P76016 Confidence 95.50% Date Thu Jan 5 12:17:28 GMT 2012 Rank 230 Aligned Residues 233 % Identity 12% Template c3gdiB_ PDB info PDB header:transcription Chain: B: PDB Molecule:period circadian protein homolog 2; PDBTitle: mammalian clock protein mper2 - crystal struture of a pas2 domain fragment Resolution 2.40 Å

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		68	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.					.	.	140	.	.	.
Predicted Secondary structure																																																																								.	.	.	.
Query SS confidence																																																																								.	.	.	.
Query Sequence		M	A	P	R	E	C	A	L	F	I	L	D	E	T	A	C	I	L	S	R	N	G	D	P	Q	T	L	Q	Q	L	S	A	L	G	F	N	D	G	T	Y	C	A	E	G	I	I	G	T	C	A	L	S	L	A	A	I	S	G	Q	A	V	K	T	M	A	D	Q	H	F	K	.	.	.	.	Q	V	L	W	N	W
Query Conservation																																																																								.	.	.	.
Alig confidence																											.	.	.	.	.	.	.	.	.	.									.																											.	.	.	.
Template Conservation																											.	.	.	.	.	.	.	.	.	.									.
Template Sequence		I	V	A	D	M	F	A	V	A	V	S	L	V	S	G	K	I	L	Y	I	S	N	Q	V	A	.	.	.	.	.	.	.	.	.	.	S	I	D	A	K	F	V	E	.	F	L	A	P	H	D	V	S	V	F	H	S	Y	T	T	P	Y	K	L	P	M	E	E	K	S	F	F	C	R	V	S	V	G	R	Y	Q
Template Known Secondary structure													S	S	S										S	S	.	.	.	.	.	.	.	.	.	.						G	G	G	.	T	B		G	G	G								T	S	T	T	T
Template Predicted Secondary structure																											.	.	.	.	.	.	.	.	.	.									.
Template SS confidence
		184	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.											.	210	.	.	.	.	.	.		.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.
		144	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	F	C	A	T	P	L	F	D	S	K	G	R	L	T	G	T	I	A	L	A	C	P	V	E	Q	T	T	A	A	D	L	P	L	T	L	A	I	A	R	E	V	G	N	L	L	L	T	D	S	L	L	A	E	T	N	R	H	L	N	Q	L	N	A	L	L	E	S	M	D	D	G	V	I	S	W	D	E	Q	G
Query Conservation
Alig confidence																																						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		P	F	R	M	T	P	Y	L	V	K	E	S	Q	L	C	C	L	L	L	A	E	R	V	H	S	G	Y	E	A	P	R	I	P	P	E	K	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	R	I	F	T	T	T	H	T	P	N	C
Template Known Secondary structure																							B				T	T	S	T	T				G	G	G	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.									T	T	S
Template Predicted Secondary structure																																						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		286	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.																																		.	.	.	.	.	.	.	.	330	.	.
		224	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.							.	260	.	.	.	.	.	.	.			.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.
Predicted Secondary structure																																					.	.	.	.	.	.										.	.
Query SS confidence																																					.	.	.	.	.	.										.	.
Query Sequence		N	L	Q	F	I	N	A	Q	A	A	R	V	L	R	L	D	A	T	A	S	Q	G	R	A	I	T	E	L	L	T	L	P	A	V	L	.	.	.	.	.	.	Q	Q	A	I	K	Q	A	H	P	.	.	L	K	H	V	E	A	T	F	E	S	Q	H	Q	F	I	D	A	V	I	T	L	K	P	I	I	E	T	Q
Query Conservation																																					.	.	.	.	.	.										.	.
Alig confidence																																					.	.	.	.	.	.										.	.
Template Conservation
Template Sequence		L	F	Q	A	V	D	E	R	A	V	P	L	L	G	Y	L	P	Q	D	L	I	E	T	P	V	L	V	Q	L	H	P	S	D	R	P	L	M	L	A	I	H	K	K	I	L	Q	A	G	G	Q	P	F	D	Y	S	P	I	R	F	R	T	R	N	G	E	Y	I	T	L	D	T	S	W	S	S	F	I	N	P	W
Template Known Secondary structure		B						T	T						S							T	T	S	B	T	G	G	G	B		T	T	T	T	T													T	T													T	T	S															T	T
Template Predicted Secondary structure
Template SS confidence
		340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.
		296	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350
Predicted Secondary structure
Query SS confidence
Query Sequence		G	T	S	F	I	L	L	L	H	P	V	E	Q	M	R	Q	L	M	T	S	Q	L	G	K	V	S	H	T	F	A	H	M	P	Q	D	D	P	Q	T	R	R	L	I	H	F	G	R	Q	A	A	R	S	S	F	P
Query Conservation
Alig confidence															.	.	.	.	.	.
Template Conservation															.	.	.	.	.	.
Template Sequence		S	R	K	I	S	F	I	I	G	R	H	K	V	.	.	.	.	.	.	R	V	G	P	L	N	E	D	V	F	A	A	P	P	C	P	E	P	S	V	Q	E	L	T	E	Q	I	H	R	L	L	M	Q	P	V	P
Template Known Secondary structure		T													.	.	.	.	.	.					S	S	S		T	T	S			S	S																T	T	S
Template Predicted Secondary structure															.	.	.	.	.	.
Template SS confidence
		420	.	.	.	.	.	.	.	.	.	430	.	.							.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions