Job Description P76016 Confidence 99.38% Date Thu Jan 5 12:17:28 GMT 2012 Rank 48 Aligned Residues 199 % Identity 15% Template c3eihB_ PDB info PDB header:protein transport Chain: B: PDB Molecule:vacuolar protein sorting-associated protein 4; PDBTitle: crystal structure of s.cerevisiae vps4 in the presence of atpgammas Resolution 3.25 Å

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		319	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.											.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.
Predicted Secondary structure																									.	.	.	.	.	.	.	.	.	.
Query SS confidence																									.	.	.	.	.	.	.	.	.	.
Query Sequence		K	V	S	H	T	F	A	H	M	P	Q	D	D	P	Q	T	R	R	L	I	H	F	G	.	.	.	.	.	.	.	.	.	.	R	Q	A	A	R	S	S	F	P	V	L	L	C	G	E	E	G	V	G	K	A	L	L	S	Q	A	I	H	N	E	S	E	R	A	A	G	P	Y	I	A	V	N	C	E	L	Y	G
Query Conservation																									.	.	.	.	.	.	.	.	.	.
Alig confidence																									.	.	.	.	.	.	.	.	.	.																																.	.	.										.	.	.	.
Template Conservation																																																																		.	.	.										.	.	.	.
Template Sequence		K	P	N	V	K	W	E	D	V	A	G	L	E	G	A	K	E	A	L	K	E	A	V	I	L	P	V	K	F	P	H	L	F	K	G	N	R	K	P	T	S	G	I	L	L	Y	G	P	P	G	T	G	K	S	Y	L	A	K	A	V	A	T	E	A	.	.	.	N	S	T	F	F	S	V	S	S	.	.	.	.
Template Known Secondary structure							S	T	T	S		S													T						G	G	G			T	T												S	T	T	S												T	T	.	.	.	T									.	.	.	.
Template Predicted Secondary structure																																																																		.	.	.										.	.	.	.
Template SS confidence
		127	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190				.	.	.	.	.	.	.	.	.
		389	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.				.	.	.	.	420	.	.	.	.	.	.	.	.												.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.
Predicted Secondary structure																													.	.	.														.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																													.	.	.														.	.	.	.	.	.	.	.	.	.	.
Query Sequence		D	A	A	L	A	E	E	F	I	G	G	D	R	T	D	N	E	N	G	R	L	S	R	L	E	L	A	.	.	.	H	G	G	T	L	F	L	E	K	I	E	Y	L	.	.	.	.	.	.	.	.	.	.	.	A	V	E	L	Q	S	A	L	L	Q	V	I	K	Q	G	V	I	T	R	L	D	A	R	R	L	I
Query Conservation																													.	.	.														.	.	.	.	.	.	.	.	.	.	.
Alig confidence		.	.	.	.	.																							.	.	.														.	.	.	.	.	.	.	.	.	.	.														.	.	.	.	.	.	.	.
Template Conservation		.	.	.	.	.																																																															.	.	.	.	.	.	.	.
Template Sequence		.	.	.	.	.	S	D	L	V	S	K	W	M	G	E	S	E	K	L	V	K	Q	L	F	A	M	A	R	E	N	K	P	S	I	I	F	I	D	Q	V	D	A	L	T	G	T	R	G	E	G	E	S	E	A	S	R	R	I	K	T	E	L	L	V	Q	M	N	.	.	.	.	.	.	.	.	G	V	G	N	D
Template Known Secondary structure		.	.	.	.	.				T	T	T	S	S	S	S		T	T	T										T	T	S	S							S	G	G	G	G					S	S	S	S	S	S	S	S	S	T	T								T	T	.	.	.	.	.	.	.	.	S	T	T	T	T
Template Predicted Secondary structure		.	.	.	.	.																																																															.	.	.	.	.	.	.	.
Template SS confidence
							200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.									.	.	.	.	.
		455	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.		.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.
Predicted Secondary structure																																			.
Query SS confidence																																			.
Query Sequence		P	I	D	V	K	V	I	A	T	T	T	A	D	L	A	M	L	V	E	Q	N	R	F	S	R	Q	L	Y	Y	A	L	H	A	.	F	E	I	T	I	P	P	L	R	M	R	R	G	S	I	P	A	L	V	N	N	K	L	R	S	L	E	K	R	F	S	T	R	L	K	I	D	D	D	A	L	A	R	L	V	S
Query Conservation																																			.
Alig confidence															.	.	.	.	.	.	.														.													.	.	.	.									.	.	.	.	.	.
Template Conservation															.	.	.	.	.	.	.																											.	.	.	.									.	.	.	.	.	.
Template Sequence		S	Q	G	V	L	V	L	G	A	T	N	I	P	.	.	.	.	.	.	.	W	Q	L	D	S	A	I	R	R	R	F	E	R	R	I	Y	I	P	L	P	D	L	A	A	R	T	.	.	.	.	T	M	F	E	I	N	V	G	.	.	.	.	.	.	D	T	P	C	V	L	T	K	E	D	Y	R	T	L	G	A
Template Known Secondary structure		S		S								S			.	.	.	.	.	.	.	T	T	S																								.	.	.	.								T	.	.	.	.	.	.	T	S
Template Predicted Secondary structure															.	.	.	.	.	.	.																											.	.	.	.									.	.	.	.	.	.
Template SS confidence
		267	.	.	270	.	.	.	.	.	.	.	.	.								280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.					.	.	.	.	310	.	.	.							.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.
		534	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		C	A	W	P	G	N	D	F	E	L	Y	S	V	I	E	N	L	A	L	S	S
Query Conservation
Alig confidence
Template Conservation
Template Sequence		M	T	E	G	Y	S	G	S	D	I	A	V	V	V	K	D	A	L	M	Q	P
Template Known Secondary structure		T		T	T															T
Template Predicted Secondary structure
Template SS confidence
		330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions