Job Description P76016 Confidence 99.23% Date Thu Jan 5 12:17:28 GMT 2012 Rank 58 Aligned Residues 234 % Identity 20% Template c3cf1C_ PDB info PDB header:transport protein Chain: C: PDB Molecule:transitional endoplasmic reticulum atpase; PDBTitle: structure of p97/vcp in complex with adp/adp.alfx Resolution 4.40 Å

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		320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.												.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.
Predicted Secondary structure																										.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																										.	.	.	.	.	.	.	.	.	.	.
Query Sequence		V	S	H	T	F	A	H	M	P	Q	D	D	P	Q	T	R	R	L	I	H	F	G	R	Q	.	.	.	.	.	.	.	.	.	.	.	A	A	R	S	S	F	P	V	L	L	C	G	E	E	G	V	G	K	A	L	L	S	Q	A	I	H	N	E	S	E	R	A	A	G	P	Y	I	A	V	N	C	E	L	Y	G
Query Conservation																										.	.	.	.	.	.	.	.	.	.	.
Alig confidence																										.	.	.	.	.	.	.	.	.	.	.																														.	.	.									.	.	.	.	.
Template Conservation																																																																		.	.	.									.	.	.	.	.
Template Sequence		P	Q	V	T	W	E	D	I	G	G	L	E	D	V	K	R	E	L	Q	E	L	V	Q	Y	P	V	E	H	P	D	K	F	L	K	F	G	M	T	P	S	K	G	V	L	F	Y	G	P	P	G	C	G	K	T	L	L	A	K	A	I	A	N	E	C	.	.	.	Q	A	N	F	I	S	I	K	.	.	.	.	.
Template Known Secondary structure						T	T	T	T		S																								T	S						S								T	T	S													T	.	.	.	T								.	.	.	.	.
Template Predicted Secondary structure																																																																		.	.	.									.	.	.	.	.
Template SS confidence
		472	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.				.	.	.	.	540	.	.	.
		389	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.				.	.	.	420	.	.	.	.	.	.	.	.	.	430	.															.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.
Predicted Secondary structure																														.	.	.																.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																														.	.	.																.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		D	A	A	L	A	E	E	F	I	G	G	D	R	T	D	N	E	N	G	R	L	S	R	L	E	L	A	H	.	.	.	G	G	T	L	F	L	E	K	I	E	Y	L	A	V	E	.	.	.	.	.	.	.	.	.	.	.	.	.	.	L	Q	S	A	L	L	Q	V	I	K	Q	G	V	I	T	R	L	D	A	R
Query Conservation																														.	.	.																.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence		.	.	.	.																									.	.	.																.	.	.	.	.	.	.	.	.	.	.	.	.	.												.	.	.	.	.	.	.	.	.
Template Conservation		.	.	.	.																																																																				.	.	.	.	.	.	.	.	.
Template Sequence		.	.	.	.	G	P	E	L	L	T	M	W	F	G	E	S	E	A	N	V	R	E	I	F	D	K	A	R	Q	A	A	P	C	V	L	F	F	D	E	L	D	S	I	A	K	A	R	G	G	N	I	G	D	G	G	G	A	A	D	R	V	I	N	Q	I	L	T	E	M	D	G	.	.	.	.	.	.	.	.	.
Template Known Secondary structure		.	.	.	.									T	T	T		T							T	T	T	T	T	T	T		S						S	S	G	G	G	G					T	T	T	T		S	S			S														S	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure		.	.	.	.																																																																				.	.	.	.	.	.	.	.	.
Template SS confidence
						544	.	.	.	.	.	550	.	.	.	.	.	.	.	.	.	560	.	.	.	.	.	.	.	.	.	570	.	.	.	.	.	.	.	.	.	580	.	.	.	.	.	.	.	.	.	590	.	.	.	.	.	.	.	.	.	600	.	.	.	.	.	.	.	.	.	610
		452	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.				.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.
Predicted Secondary structure																			.	.	.																																																												.
Query SS confidence																			.	.	.																																																												.
Query Sequence		R	L	I	P	I	D	V	K	V	I	A	T	T	T	A	D	L	.	.	.	A	M	L	V	E	Q	N	R	F	S	R	Q	L	Y	Y	A	L	H	A	F	E	I	T	I	P	P	L	R	M	R	R	G	S	I	P	A	L	V	N	N	K	L	R	S	L	E	K	R	F	S	T	R	L	K	I	D	D	D	A	.
Query Conservation																			.	.	.																																																												.
Alig confidence																			.	.	.															.	.	.	.	.	.	.												.	.	.	.	.	.	.	.	.	.	.	.																.
Template Conservation																																				.	.	.	.	.	.	.												.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		M	S	T	K	K	N	V	F	I	I	G	A	T	N	R	P	D	I	I	D	P	A	I	L	R	P	G	R	L	D	Q	L	I	Y	.	.	.	.	.	.	.	I	P	L	P	D	E	K	S	R	V	A	.	.	.	.	.	.	.	.	.	.	.	.	I	L	K	A	N	L	R	K	S	P	V	A	K	D	V	D
Template Known Secondary structure		S		T	T	S	S								S		G	G	G			G	G	G	T	S	T	T	T	S						.	.	.	.	.	.	.						T	T					.	.	.	.	.	.	.	.	.	.	.	.						T	T	T	S		B		S	S
Template Predicted Secondary structure																																				.	.	.	.	.	.	.												.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		611	.	.	.	.	.	.	.	.	620	.	.	.	.	.	.	.	.	.	630	.	.	.	.	.	.	.	.	.	640	.	.	.	.								.	.	.	.	.	650	.	.	.	.	.													.	.	.	.	660	.	.	.	.	.	.	.	.	.	670	.
		528	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.	.	.	.	560	.	.	.	.	.	.	.	.	.	570	.	.	.	.	.	.	.	.	.	580	.	.	.	.	.	.	.	.	.	590	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	A	R	L	V	S	C	A	W	P	G	N	D	F	E	L	Y	S	V	I	E	N	L	A	L	S	S	D	N	G	R	I	R	V	S	D	L	P	E	H	L	F	T	E	Q	A	T	D	D	V	S	A	T	R	L	S	T	S	L	S	F	A	E	V	E	K
Query Conservation
Alig confidence
Template Conservation
Template Sequence		L	E	F	L	A	K	M	T	N	G	F	S	G	A	D	L	T	E	I	C	Q	R	A	C	K	L	A	I	R	E	S	I	E	S	E	I	V	P	E	I	R	R	D	H	F	E	E	A	M	R	F	A	R	R	S	V	S	D	N	D	I	R	K	Y	E	M
Template Known Secondary structure						T	T	T		S	S															T	T														B										T	T				S	S
Template Predicted Secondary structure
Template SS confidence
		672	.	.	.	.	.	.	.	680	.	.	.	.	.	.	.	.	.	690	.	.	.	.	.	.	.	.	.	700	.	.	.	.	.	.	.	.	.	710	.	.	.	.	.	.	.	.	.	720	.	.	.	.	.	.	.	.	.	730	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions