Job Description P76016 Confidence 98.96% Date Thu Jan 5 12:17:28 GMT 2012 Rank 86 Aligned Residues 219 % Identity 15% Template c2x8aA_ PDB info PDB header:nuclear protein Chain: A: PDB Molecule:nuclear valosin-containing protein-like; PDBTitle: human nuclear valosin containing protein like (nvl), c-2 terminal aaa-atpase domain Resolution 2.60 Å

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		327	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.												.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.
Predicted Secondary structure																							.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																							.	.	.	.	.	.	.	.	.	.	.
Query Sequence		M	P	Q	D	D	P	Q	T	R	R	L	I	H	F	G	R	Q	A	A	R	S	.	.	.	.	.	.	.	.	.	.	.	S	F	P	V	L	L	C	G	E	E	G	V	G	K	A	L	L	S	Q	A	I	H	N	E	S	E	R	A	A	G	P	Y	I	A	V	N	C	E	L	Y	G	D	A	A	L	A	E	E
Query Conservation																							.	.	.	.	.	.	.	.	.	.	.
Alig confidence																							.	.	.	.	.	.	.	.	.	.	.																										.	.	.
Template Conservation																																																											.	.	.
Template Sequence		I	G	A	L	E	D	I	R	E	E	L	T	M	A	I	L	A	P	V	R	N	P	D	Q	F	K	A	L	G	L	V	T	P	A	G	V	L	L	A	G	P	P	G	C	G	K	T	L	L	A	K	A	V	A	N	E	S	.	.	.	G	L	N	F	I	S	V	K	G	P	E	L	L	N	M	Y	V	G	E	S
Template Known Secondary structure																	T					S							T	T					S						S	S	T	T	S													T	.	.	.	T								T	T	T	T		S	S	T	T
Template Predicted Secondary structure																																																											.	.	.
Template SS confidence
		583	.	.	.	.	.	.	590	.	.	.	.	.	.	.	.	.	600	.	.	.	.	.	.	.	.	.	610	.	.	.	.	.	.	.	.	.	620	.	.	.	.	.	.	.	.	.	630	.	.	.	.	.	.	.	.	.				640	.	.	.	.	.	.	.	.	.	650	.	.	.	.	.	.	.	.	.
		396	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		F	I	G	G	D	R	T	D	N	E	N	G	R	L	S	R	L	E	L	A	H	G	G	T	L	F	L	E	K	I	E	Y	L	A	V	E	L	Q	S	A	L	L	Q	V	I	K	Q	G	V	I	T	R	L	D	A	R	R	L	I	P	I	D	V	K	V	I	A	T	T	T	A	D	L	A	M	L	V	E	Q	N
Query Conservation
Alig confidence		.	.	.	.	.	.																																										.	.	.	.	.	.	.																			.	.	.	.	.	.	.
Template Conservation		.	.	.	.	.	.																																										.	.	.	.	.	.	.																			.	.	.	.	.	.	.
Template Sequence		.	.	.	.	.	.	E	R	A	V	R	Q	V	F	Q	R	A	K	N	S	A	P	C	V	I	F	F	D	E	V	D	A	L	C	P	S	V	R	V	V	N	Q	L	L	T	E	M	.	.	.	.	.	.	.	D	G	L	E	A	R	Q	Q	V	F	I	M	A	A	T	N	R	P	.	.	.	.	.	.	.	D
Template Known Secondary structure		.	.	.	.	.	.														T		S							T		T	T	T				T	T										.	.	.	.	.	.	.		T			S	T	T									S		G	.	.	.	.	.	.	.	G
Template Predicted Secondary structure		.	.	.	.	.	.																																										.	.	.	.	.	.	.																			.	.	.	.	.	.	.
Template SS confidence
								660	.	.	.	.	.	.	.	.	.	670	.	.	.	.	.	.	.	.	.	680	.	.	.	.	.	.	.	.	.	690	.	.	.	.	.	.	.	.	.	700								.	.	.	.	.	.	.	.	.	710	.	.	.	.	.	.	.	.								.
		476	.	.	.	480	.	.	.	.	.	.	.		.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.		.	.	.	.	.	.		.	540	.	.	.	.	.	.	.	.	.	550	.	.
Predicted Secondary structure														.																																														.							.
Query SS confidence														.																																														.							.
Query Sequence		R	F	S	R	Q	L	Y	Y	A	L	H	A	.	F	E	I	T	I	P	P	L	R	M	R	R	G	S	I	P	A	L	V	N	N	K	L	R	S	L	E	K	R	F	S	T	R	L	K	I	D	D	D	A	L	A	R	L	V	.	S	C	A	W	P	G	.	N	D	F	E	L	Y	S	V	I	E	N	L	A	L
Query Conservation														.																																														.							.
Alig confidence														.											.	.	.	.	.	.																														.							.
Template Conservation																									.	.	.	.	.	.
Template Sequence		I	I	D	P	A	I	L	R	P	G	R	L	D	K	T	L	F	V	G	L	P	P	P	.	.	.	.	.	.	A	D	R	L	A	I	L	K	T	I	T	K	N	G	T	K	P	P	L	D	A	D	V	N	L	E	A	I	A	G	D	L	R	C	D	C	Y	T	G	A	D	L	S	A	L	V	R	E	A	S	I
Template Known Secondary structure		G	S						S	T	T	S	S								S				.	.	.	.	.	.											T	T	T	T	B	T	T	B	B		T	T								T		S	G	G	G	S
Template Predicted Secondary structure																									.	.	.	.	.	.
Template SS confidence
		729	730	.	.	.	.	.	.	.	.	.	740	.	.	.	.	.	.	.	.	.	750	.							.	.	.	.	.	.	.	.	760	.	.	.	.	.	.	.	.	.	770	.	.	.	.	.	.	.	.	.	780	.	.	.	.	.	.	.	.	.	790	.	.	.	.	.	.	.	.	.	800	.	.
		553	.				.	.	.	.	.	560	.	.	.	.	.	.	.	.	.	570	.	.	.	.
Predicted Secondary structure				.	.	.
Query SS confidence				.	.	.
Query Sequence		S	S	.	.	.	D	N	G	R	I	R	V	S	D	L	P	E	H	L	F	T	E	Q	A	T
Query Conservation				.	.	.
Alig confidence				.	.	.
Template Conservation
Template Sequence		C	A	L	R	Q	E	M	L	K	V	S	H	K	H	F	E	E	A	F	K	K	V	R	S	S
Template Known Secondary structure											B										T	T
Template Predicted Secondary structure
Template SS confidence
		803	.	.	.	.	.	.	810	.	.	.	.	.	.	.	.	.	820	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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