Job Description P76016 Confidence 99.11% Date Thu Jan 5 12:17:28 GMT 2012 Rank 75 Aligned Residues 231 % Identity 19% Template c2v1uA_ PDB info PDB header:replication Chain: A: PDB Molecule:cell division control protein 6 homolog; PDBTitle: structure of the aeropyrum pernix orc1 protein in complex2 with dna Resolution 3.10 Å

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		320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350			.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.							.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.
Predicted Secondary structure																																	.	.																						.	.	.	.	.	.
Query SS confidence																																	.	.																						.	.	.	.	.	.
Query Sequence		V	S	H	T	F	A	H	M	P	Q	D	D	P	Q	T	R	R	L	I	H	F	G	R	Q	A	A	R	S	S	F	P	.	.	V	L	L	C	G	E	E	G	V	G	K	A	L	L	S	Q	A	I	H	N	E	.	.	.	.	.	.	S	E	R	A	A	G	P	Y	I	A	V	N	C	E	L	Y	G	D	A	A
Query Conservation																																	.	.																						.	.	.	.	.	.
Alig confidence																																	.	.																						.	.	.	.	.	.
Template Conservation
Template Sequence		P	D	Y	V	P	D	V	L	P	H	R	E	A	E	L	R	R	L	A	E	V	L	A	P	A	L	R	G	E	K	P	S	N	A	L	L	Y	G	L	T	G	T	G	K	T	A	V	A	R	L	V	L	R	R	L	E	A	R	A	S	S	L	G	V	L	V	K	P	I	Y	V	N	A	R	H	R	E	T	P	Y
Template Known Secondary structure		T	T				S			T	T											T	T	G	G	G	T	S	S										B		T	T	S	S																				T										T	T	T	S		S
Template Predicted Secondary structure
Template SS confidence
		26	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.
		392	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.													.	.	.	.	.	.	420	.	.	.	.	.	.	.	.		.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.
Predicted Secondary structure																								.	.	.	.	.	.	.	.	.	.	.	.																.
Query SS confidence																								.	.	.	.	.	.	.	.	.	.	.	.																.
Query Sequence		L	A	E	E	F	I	G	G	D	R	T	D	N	E	N	G	R	L	S	R	L	E	.	.	.	.	.	.	.	.	.	.	.	.	L	A	H	G	G	T	L	F	L	E	K	I	E	Y	L	.	A	V	E	L	Q	S	A	L	L	Q	V	I	K	Q	G	V	I	T	R	L	D	A	R	R	L	I	P	I	D	V
Query Conservation																								.	.	.	.	.	.	.	.	.	.	.	.																.
Alig confidence																								.	.	.	.	.	.	.	.	.	.	.	.																.														.	.	.	.	.	.	.	.	.	.
Template Conservation																																																																	.	.	.	.	.	.	.	.	.	.
Template Sequence		R	V	A	S	A	I	A	E	A	V	G	V	R	V	P	F	T	G	L	S	V	G	E	V	Y	E	R	L	V	K	R	L	S	R	L	R	G	I	Y	I	I	V	L	D	E	I	D	F	L	P	K	R	P	G	G	Q	D	L	L	Y	R	I	T	.	.	.	.	.	.	.	.	.	.	R	I	N	Q	E	L	V
Template Known Secondary structure												S					S	S																T	T	S		S								T	T	T					S	T	T										.	.	.	.	.	.	.	.	.	.		G	G	G
Template Predicted Secondary structure																																																																	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		106	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.											.	170	.	.	.	.	.
		459	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.			.	.	.	.	.
Predicted Secondary structure																																																																											.	.
Query SS confidence																																																																											.	.
Query Sequence		K	V	I	A	T	T	T	A	D	L	A	M	L	V	E	Q	N	R	F	S	R	Q	L	Y	Y	A	L	H	A	F	E	I	T	I	P	P	L	R	M	R	R	G	S	I	P	A	L	V	N	N	K	L	R	S	L	E	K	R	F	S	T	R	L	K	I	D	D	D	A	L	A	R	L	.	.	V	S	C	A	W
Query Conservation																																																																											.	.
Alig confidence												.	.	.	.																										.	.	.	.	.	.																													.	.
Template Conservation												.	.	.	.																										.	.	.	.	.	.
Template Sequence		S	L	V	G	I	T	N	S	L	G	.	.	.	.	F	V	E	N	L	E	P	R	V	K	S	S	L	G	E	V	E	L	V	F	P	P	Y	T	A	.	.	.	.	.	.	P	Q	L	R	D	I	L	E	T	R	A	E	E	A	F	N	P	G	V	L	D	P	D	V	V	P	L	C	A	A	L	A	A	R	E
Template Known Secondary structure								S		S	T	.	.	.	.	T	S	S	S	S						T	T	T	T	S					B						.	.	.	.	.	.															B		T	T	T	B		S	S											S	S
Template Predicted Secondary structure												.	.	.	.																										.	.	.	.	.	.
Template SS confidence
		181	.	.	.	.	.	.	.	.	190					.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.							.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250
		537	.	.	540	.	.	.	.	.	.	.	.	.	550				.	.	.	.	.	.	.	.	.	560	.	.	.	.	.	.	.	.	.	570
Predicted Secondary structure																.	.	.
Query SS confidence																.	.	.
Query Sequence		P	G	N	D	F	E	L	Y	S	V	I	E	N	L	.	.	.	A	L	S	S	D	N	G	R	I	R	V	S	D	L	P	E	H	L	F	T
Query Conservation																.	.	.
Alig confidence																.	.	.
Template Conservation
Template Sequence		H	G	D	A	R	R	A	L	D	L	L	R	V	A	G	E	I	A	E	R	R	R	E	E	R	V	R	R	E	H	V	Y	S	A	R	A	E
Template Known Secondary structure		S																				T	T		S		B
Template Predicted Secondary structure
Template SS confidence
		251	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions