Job Description P76016 Confidence 99.12% Date Thu Jan 5 12:17:28 GMT 2012 Rank 74 Aligned Residues 291 % Identity 10% Template c2qbyA_ PDB info PDB header:replication/dna Chain: A: PDB Molecule:cell division control protein 6 homolog 1; PDBTitle: crystal structure of a heterodimer of cdc6/orc1 initiators2 bound to origin dna (from s. solfataricus) Resolution 3.35 Å

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		315	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350			.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.				.	380	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																																						.	.																													.	.	.
Query SS confidence																																						.	.																													.	.	.
Query Sequence		S	Q	L	G	K	V	S	H	T	F	A	H	M	P	Q	D	D	P	Q	T	R	R	L	I	H	F	G	R	Q	A	A	R	S	S	F	P	.	.	V	L	L	C	G	E	E	G	V	G	K	A	L	L	S	Q	A	I	H	N	E	S	E	R	A	A	G	P	.	.	.	Y	I	A	V	N	C	E	L	Y	G	D
Query Conservation																																						.	.																													.	.	.
Alig confidence																																						.	.																													.	.	.
Template Conservation
Template Sequence		R	E	Y	L	L	P	D	Y	I	P	D	E	L	P	H	R	E	D	Q	I	R	K	I	A	S	I	L	A	P	L	Y	R	E	E	K	P	N	N	I	F	I	Y	G	L	T	G	T	G	K	T	A	V	V	K	F	V	L	S	K	L	H	K	K	F	L	G	K	F	K	H	V	Y	I	N	T	R	Q	I	D	T
Template Known Secondary structure		G	G	G	G	S	S	S				S			T	T											S	S	G	G	G	G	G	T												T	T	S	S																T		S	S													S
Template Predicted Secondary structure
Template SS confidence
		21	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100
		390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410													.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.
Predicted Secondary structure																							.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																							.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		A	A	L	A	E	E	F	I	G	G	D	R	T	D	N	E	N	G	R	L	S	.	.	.	.	.	.	.	.	.	.	.	.	R	L	E	L	A	H	G	G	T	L	F	L	E	K	I	E	Y	L	A	V	E	L	Q	S	A	L	L	Q	V	I	K	Q	G	V	I	T	R	L	D	A	R	R	L	I	P	I	D
Query Conservation																							.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																							.	.	.	.	.	.	.	.	.	.	.	.																																.	.	.	.	.	.	.	.	.	.
Template Conservation																																																																		.	.	.	.	.	.	.	.	.	.
Template Sequence		P	Y	R	V	L	A	D	L	L	E	S	L	D	V	K	V	P	F	T	G	L	S	I	A	E	L	Y	R	R	L	V	K	A	V	R	D	Y	G	S	Q	V	V	I	V	L	D	E	I	D	A	F	V	K	K	Y	N	D	D	I	L	Y	K	L	S	.	.	.	.	.	.	.	.	.	.	R	I	N	S	E	V
Template Known Secondary structure										T	T	T	T	S					S	S	S																T			S								T							S	S		S	T							.	.	.	.	.	.	.	.	.	.					S
Template Predicted Secondary structure																																																																		.	.	.	.	.	.	.	.	.	.
Template SS confidence
		101	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.											.	.	.	.	.	170
		458	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.			.	.
Predicted Secondary structure																																																																														.	.
Query SS confidence																																																																														.	.
Query Sequence		V	K	V	I	A	T	T	T	A	D	L	A	M	L	V	E	Q	N	R	F	S	R	Q	L	Y	Y	A	L	H	A	F	E	I	T	I	P	P	L	R	M	R	R	G	S	I	P	A	L	V	N	N	K	L	R	S	L	E	K	R	F	S	T	R	L	K	I	D	D	D	A	L	A	R	L	V	S	.	.	C	A
Query Conservation																																																																														.	.
Alig confidence																			.	.																						.	.	.	.	.	.																															.	.
Template Conservation																			.	.																						.	.	.	.	.	.
Template Sequence		N	K	I	S	F	I	G	I	T	N	D	V	K	F	V	D	L	.	.	L	D	P	R	V	K	S	S	L	S	E	E	E	I	I	F	P	P	Y	N	A	.	.	.	.	.	.	E	E	L	E	D	I	L	T	K	R	A	Q	M	A	F	K	P	G	V	L	P	D	N	V	I	K	L	C	A	A	L	A	A	R
Template Known Secondary structure											S		G	G	G	G	G	G	.	.		T	T					T	T	T	T											.	.	.	.	.	.															B		S	S		S
Template Predicted Secondary structure																			.	.																						.	.	.	.	.	.
Template SS confidence
		171	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.			.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.							.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.
		536	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.				.	.	.	.	.	560	.	.	.	.	.	.	.	.	.	570	.	.	.	.	.	.	.	.	.	580	.	.	.	.	.	.	.	.	.	590	.	.	.	.	.	.	.	.	.	600	.	.	.	.	.	.	.	.	.	610	.	.
Predicted Secondary structure																					.	.	.
Query SS confidence																					.	.	.
Query Sequence		W	P	G	N	D	F	E	L	Y	S	V	I	E	N	L	A	L	S	S	.	.	.	D	N	G	R	I	R	V	S	D	L	P	E	H	L	F	T	E	Q	A	T	D	D	V	S	A	T	R	L	S	T	S	L	S	F	A	E	V	E	K	E	A	I	I	N	A	A	Q	V	T	G	G	R	I	Q	E	M	S	A
Query Conservation																					.	.	.
Alig confidence																					.	.	.																												.	.	.	.	.
Template Conservation																																																			.	.	.	.	.
Template Sequence		E	H	G	D	A	R	R	A	L	D	L	L	R	V	S	G	E	I	A	E	R	M	K	D	T	K	V	K	E	E	Y	V	Y	M	A	K	E	E	I	E	R	D	R	V	R	D	I	I	L	.	.	.	.	.	T	L	P	F	H	S	K	L	V	L	M	A	V	V	S	I	S	V	S	T	T	G	A	V	Y	E
Template Known Secondary structure		T	T																				T	T		S	S																								.	.	.	.	.	T	S
Template Predicted Secondary structure																																																			.	.	.	.	.
Template SS confidence
		245	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.						.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.
		613	.											.	.	.	.	.	620	.	.	.	.	.	.	.	.
Predicted Secondary structure				.	.	.	.	.	.	.	.	.	.
Query SS confidence				.	.	.	.	.	.	.	.	.	.
Query Sequence		L	L	.	.	.	.	.	.	.	.	.	.	G	I	G	R	T	T	L	W	R	K	M	K	Q	H
Query Conservation				.	.	.	.	.	.	.	.	.	.
Alig confidence				.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		T	Y	L	N	I	C	K	K	L	G	V	E	A	V	T	Q	R	R	V	S	D	I	I	N	E	L
Template Known Secondary structure											T
Template Predicted Secondary structure
Template SS confidence
		325	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions