Job Description P76016 Confidence 99.16% Date Thu Jan 5 12:17:28 GMT 2012 Rank 69 Aligned Residues 201 % Identity 16% Template c2chvE_ PDB info PDB header:dna-binding protein Chain: E: PDB Molecule:replication factor c small subunit; PDBTitle: replication factor c adpnp complex Resolution 4.00 Å

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		320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.			.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.
Predicted Secondary structure																																																						.	.
Query SS confidence																																																						.	.
Query Sequence		V	S	H	T	F	A	H	M	P	Q	D	D	P	Q	T	R	R	L	I	H	F	G	R	Q	A	A	R	S	S	F	P	V	L	L	C	G	E	E	G	V	G	K	A	L	L	S	Q	A	I	H	N	E	.	.	S	E	R	A	A	G	P	Y	I	A	V	N	C	E	L	Y	G	D	A	A	L	A	E	E	F	I
Query Conservation																																																						.	.
Alig confidence																										.	.																											.	.
Template Conservation																										.	.
Template Sequence		R	P	R	T	L	D	E	V	V	G	Q	D	E	V	I	Q	R	L	K	G	Y	V	E	R	.	.	K	N	I	P	H	L	L	F	S	G	P	P	G	T	G	K	T	A	T	A	I	A	L	A	R	D	L	F	G	E	N	W	R	D	N	F	I	E	M	N	A	S	D	E	R	G	I	D	V	V	R	H	K	I
Template Known Secondary structure				S	S	G	G	G			S									G	G	G	T	T	T	.	.	T											T	T	S	S														T	T			T	T	T						T	T	S	T	T	S	T	T	T	S	S
Template Predicted Secondary structure																										.	.
Template SS confidence
		12	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.			.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.
		398	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		G	G	D	R	T	D	N	E	N	G	R	L	S	R	L	E	L	A	H	G	G	T	L	F	L	E	K	I	E	Y	L	A	V	E	L	Q	S	A	L	L	Q	V	I	K	Q	G	V	I	T	R	L	D	A	R	R	L	I	P	I	D	V	K	V	I	A	T	T	T	A	D	L	A	M	L	V	E	Q	N	R	F
Query Conservation
Alig confidence												.	.	.	.	.	.																														.	.	.	.	.	.	.	.	.	.	.													.	.	.	.	.	.	.
Template Conservation												.	.	.	.	.	.																														.	.	.	.	.	.	.	.	.	.	.													.	.	.	.	.	.	.
Template Sequence		K	E	F	A	R	T	A	P	I	G	.	.	.	.	.	.	G	A	P	F	K	I	I	F	L	D	E	A	D	A	L	T	A	D	A	Q	A	A	L	R	R	T	M	E	M	.	.	.	.	.	.	.	.	.	.	.	Y	S	K	S	C	R	F	I	L	S	C	N	.	.	.	.	.	.	.	Y	V	S	R	I
Template Known Secondary structure							S			T	T	.	.	.	.	.	.	T										T	G	G	G	S							T	T	G	G	G	T	S	S	.	.	.	.	.	.	.	.	.	.	.	S	S	S	S								S	.	.	.	.	.	.	.		G	G	G	S
Template Predicted Secondary structure												.	.	.	.	.	.																														.	.	.	.	.	.	.	.	.	.	.													.	.	.	.	.	.	.
Template SS confidence
		90	.	.	.	.	.	.	.	.	.							100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.												.	130	.	.	.	.	.	.	.	.	.	140								.	.	.	.	.
		478	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		S	R	Q	L	Y	Y	A	L	H	A	F	E	I	T	I	P	P	L	R	M	R	R	G	S	I	P	A	L	V	N	N	K	L	R	S	L	E	K	R	F	S	T	R	L	K	I	D	D	D	A	L	A	R	L	V	S	C	A	W	P	G	N	D	F	E	L	Y	S	V	I	E	N	L	A	L	S	S	D	N	G
Query Conservation
Alig confidence																														.	.	.	.	.	.	.	.	.	.																						.
Template Conservation																														.	.	.	.	.	.	.	.	.	.																						.
Template Sequence		I	E	P	I	Q	S	R	C	A	V	F	R	F	K	P	V	P	K	E	A	M	K	K	R	L	L	E	I	.	.	.	.	.	.	.	.	.	.	C	E	K	E	G	V	K	I	T	E	D	G	L	E	A	L	I	Y	I	S	G	.	G	D	F	R	K	A	I	N	A	L	Q	G	A	A	A	I	G	E	V	V
Template Known Secondary structure							T	T																						.	.	.	.	.	.	.	.	.	.			T	T	T			B													T	.	T														S	S	S	S		B
Template Predicted Secondary structure																														.	.	.	.	.	.	.	.	.	.																						.
Template SS confidence
		146	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.											.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.		.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions