Job Description P76016 Confidence 97.24% Date Thu Jan 5 12:17:28 GMT 2012 Rank 163 Aligned Residues 132 % Identity 13% Template c1ysqA_ PDB info PDB header:gene regulation Chain: A: PDB Molecule:hth-type transcriptional regulator yiaj; PDBTitle: the crystal structure of transcriptional regulator yaij Resolution 1.75 Å

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		52	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.
Predicted Secondary structure																																																																										.	.	.	.	.	.	.	.
Query SS confidence																																																																										.	.	.	.	.	.	.	.
Query Sequence		A	M	L	T	L	G	Q	A	A	L	E	D	A	W	E	Y	M	A	P	R	E	C	A	L	F	I	L	D	E	T	A	C	I	L	S	R	N	G	D	P	Q	T	L	Q	Q	L	S	A	L	G	F	N	D	G	T	Y	C	A	E	G	I	I	G	T	C	A	L	S	L	A	A	I	.	.	.	.	.	.	.	.
Query Conservation																																																																										.	.	.	.	.	.	.	.
Alig confidence																																											.	.	.													.	.	.														.	.	.	.	.	.	.	.
Template Conservation																																											.	.	.													.	.	.
Template Sequence		N	I	I	H	I	A	A	P	H	L	E	A	L	N	I	A	T	G	E	T	I	N	F	S	S	R	E	D	D	H	A	I	L	I	Y	K	L	E	P	T	T	.	.	.	G	M	L	R	T	R	A	Y	I	G	Q	H	.	.	.	M	P	L	Y	C	S	A	M	G	K	I	Y	M	A	F	G	H	P	D	Y	V
Template Known Secondary structure																				S									T	T											S	S	.	.	.						S			T	T			.	.	.			G	G	G										T	S
Template Predicted Secondary structure																																											.	.	.													.	.	.
Template SS confidence
		7	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.				.	.	50	.	.	.	.	.	.	.	.	.				60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80
								124	.	.	.	.	.	130	.	.	.	.	.	.	.	.																							.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.
Predicted Secondary structure		.	.	.	.	.	.																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																		.	.	.	.
Query SS confidence		.	.	.	.	.	.																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																		.	.	.	.
Query Sequence		.	.	.	.	.	.	S	G	Q	A	V	K	T	M	A	D	Q	H	F	K	Q	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	V	L	W	N	W	A	F	C	A	T	P	L	F	D	S	K	G	R	L	T	G	T	I	A	L	A	C	P	V	E	Q	T	T	.	.	.	.
Query Conservation		.	.	.	.	.	.																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																		.	.	.	.
Alig confidence		.	.	.	.	.	.																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																		.	.	.	.
Template Conservation
Template Sequence		K	S	Y	W	E	S	H	Q	H	E	I	Q	P	L	T	R	N	T	I	T	E	L	P	A	M	F	D	E	L	A	H	I	R	E	S	G	A	A	M	D	R	E	E	N	E	L	G	V	S	C	I	A	V	P	V	F	D	I	H	G	R	V	P	Y	A	V	S	I	S	L	S	T	S	R	L	K	Q	V	G	E
Template Known Secondary structure								T	T	T	T				S	S	T	T				S															T						S	S	S	S	T	T											T	T	S			S
Template Predicted Secondary structure
Template SS confidence
		81	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160
		172	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	A	D	L	P	L	T	L	A	I	A	R	E	V	G	N	L	L
Query Conservation
Alig confidence
Template Conservation
Template Sequence		K	N	L	L	K	P	L	R	E	T	A	Q	A	I	S	N	E	L
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		161	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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