Job Description P76016 Confidence 99.19% Date Thu Jan 5 12:17:28 GMT 2012 Rank 63 Aligned Residues 203 % Identity 13% Template c1sxjD_ PDB info PDB header:replication Chain: D: PDB Molecule:activator 1 41 kda subunit; PDBTitle: crystal structure of the eukaryotic clamp loader2 (replication factor c, rfc) bound to the dna sliding clamp3 (proliferating cell nuclear antigen, pcna) Resolution 2.85 Å

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		320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.					.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.
Predicted Secondary structure																																																						.	.	.	.
Query SS confidence																																																						.	.	.	.
Query Sequence		V	S	H	T	F	A	H	M	P	Q	D	D	P	Q	T	R	R	L	I	H	F	G	R	Q	A	A	R	S	S	F	P	V	L	L	C	G	E	E	G	V	G	K	A	L	L	S	Q	A	I	H	N	E	.	.	.	.	S	E	R	A	A	G	P	Y	I	A	V	N	C	E	L	Y	G	D	A	A	L	A	E	E
Query Conservation																																																						.	.	.	.
Alig confidence																										.	.																											.	.	.	.
Template Conservation																										.	.
Template Sequence		R	P	K	N	L	D	E	V	T	A	Q	D	H	A	V	T	V	L	K	K	T	L	K	S	.	.	A	N	L	P	H	M	L	F	Y	G	P	P	G	T	G	K	T	S	T	I	L	A	L	T	K	E	L	Y	G	P	D	L	M	K	S	R	I	L	E	L	N	A	S	D	E	R	G	I	S	I	V	R	E	K
Template Known Secondary structure				S	S	T	T	T			S			T	T								T	T		.	.	T	T									S	T	T	S	S																			T	T	S						S	S	S								T	T
Template Predicted Secondary structure																										.	.
Template SS confidence
		32	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.			.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.
		396	.	.				.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.
Predicted Secondary structure					.	.	.
Query SS confidence					.	.	.
Query Sequence		F	I	G	.	.	.	G	D	R	T	D	N	E	N	G	R	L	S	R	L	E	L	A	H	G	G	T	L	F	L	E	K	I	E	Y	L	A	V	E	L	Q	S	A	L	L	Q	V	I	K	Q	G	V	I	T	R	L	D	A	R	R	L	I	P	I	D	V	K	V	I	A	T	T	T	A	D	L	A	M	L	V
Query Conservation					.	.	.
Alig confidence					.	.	.																																													.	.	.	.	.	.	.	.	.	.	.													.	.	.	.	.	.	.
Template Conservation																																																				.	.	.	.	.	.	.	.	.	.	.													.	.	.	.	.	.	.
Template Sequence		V	K	N	F	A	R	L	T	V	S	K	P	S	K	H	D	L	E	N	Y	P	C	P	P	Y	K	I	I	I	L	D	E	A	D	S	M	T	A	D	A	Q	S	A	L	R	R	T	M	E	T	.	.	.	.	.	.	.	.	.	.	.	Y	S	G	V	T	R	F	C	L	I	C	N	.	.	.	.	.	.	.
Template Known Secondary structure								S							T	T					S				S							T	T	G	G	G	S															.	.	.	.	.	.	.	.	.	.	.	T	T	T	T								S	.	.	.	.	.	.	.
Template Predicted Secondary structure																																																				.	.	.	.	.	.	.	.	.	.	.													.	.	.	.	.	.	.
Template SS confidence
		110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.												160	.	.	.	.	.	.	.	.	.	170	.
		473	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		E	Q	N	R	F	S	R	Q	L	Y	Y	A	L	H	A	F	E	I	T	I	P	P	L	R	M	R	R	G	S	I	P	A	L	V	N	N	K	L	R	S	L	E	K	R	F	S	T	R	L	K	I	D	D	D	A	L	A	R	L	V	S	C	A	W	P	G	N	D	F	E	L	Y	S	V	I	E	N	L	A	L
Query Conservation
Alig confidence																																						.	.	.	.	.	.	.	.	.	.																		.
Template Conservation																																						.	.	.	.	.	.	.	.	.	.																		.
Template Sequence		Y	V	T	R	I	I	D	P	L	A	S	Q	C	S	K	F	R	F	K	A	L	D	A	S	N	A	I	D	R	L	R	F	I	S	E	Q	.	.	.	.	.	.	.	.	.	.	E	N	V	K	C	D	D	G	V	L	E	R	I	L	D	I	S	.	A	G	D	L	R	R	G	I	T	L	L	Q	S	A	S	K
Template Known Secondary structure			G	G	G	S								S																							T	.	.	.	.	.	.	.	.	.	.	T	T															T	.	S	S												T
Template Predicted Secondary structure																																						.	.	.	.	.	.	.	.	.	.																		.
Template SS confidence
		172	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.											.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.		.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240
		553
Predicted Secondary structure
Query SS confidence
Query Sequence		S
Query Conservation
Alig confidence
Template Conservation
Template Sequence		G
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		241

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions