Job Description P76016 Confidence 99.18% Date Thu Jan 5 12:17:28 GMT 2012 Rank 65 Aligned Residues 200 % Identity 13% Template c1sxjB_ PDB info PDB header:replication Chain: B: PDB Molecule:activator 1 37 kda subunit; PDBTitle: crystal structure of the eukaryotic clamp loader2 (replication factor c, rfc) bound to the dna sliding clamp3 (proliferating cell nuclear antigen, pcna) Resolution 2.85 Å

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		320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		V	S	H	T	F	A	H	M	P	Q	D	D	P	Q	T	R	R	L	I	H	F	G	R	Q	A	A	R	S	S	F	P	V	L	L	C	G	E	E	G	V	G	K	A	L	L	S	Q	A	I	H	N	E	S	E	R	A	A	G	P	Y	I	A	V	N	C	E	L	Y	G	D	A	A	L	A	E	E	F	I	G	G
Query Conservation
Alig confidence																										.	.
Template Conservation																										.	.
Template Sequence		R	P	Q	V	L	S	D	I	V	G	N	K	E	T	I	D	R	L	Q	Q	I	A	K	D	.	.	G	N	M	P	H	M	I	I	S	G	M	P	G	I	G	K	T	T	S	V	H	C	L	A	H	E	L	L	G	R	S	Y	A	D	G	V	L	E	L	N	A	S	D	D	R	G	I	D	V	V	R	N	Q	I
Template Known Secondary structure				S	S	G	G	G			S		T												S	.	.											S	T	T	S	S														G	G	G										T	T	S			S						T
Template Predicted Secondary structure																										.	.
Template SS confidence
		16	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.			40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.
		400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		D	R	T	D	N	E	N	G	R	L	S	R	L	E	L	A	H	G	G	T	L	F	L	E	K	I	E	Y	L	A	V	E	L	Q	S	A	L	L	Q	V	I	K	Q	G	V	I	T	R	L	D	A	R	R	L	I	P	I	D	V	K	V	I	A	T	T	T	A	D	L	A	M	L	V	E	Q	N	R	F	S	R
Query Conservation
Alig confidence										.	.	.																																	.	.	.	.	.	.	.	.	.	.	.													.	.	.	.	.	.	.
Template Conservation										.	.	.																																	.	.	.	.	.	.	.	.	.	.	.													.	.	.	.	.	.	.
Template Sequence		K	H	F	A	Q	K	K	L	.	.	.	H	L	P	P	G	K	H	K	I	V	I	L	D	E	A	D	S	M	T	A	G	A	Q	Q	A	L	R	R	T	M	E	L	.	.	.	.	.	.	.	.	.	.	.	Y	S	N	S	T	R	F	A	F	A	C	N	.	.	.	.	.	.	.	Q	S	N	K	I	I	E
Template Known Secondary structure										.	.	.				T	T									S	G	G	G	S							T	T							.	.	.	.	.	.	.	.	.	.	.	T	T	T	T								S	.	.	.	.	.	.	.		G	G	G	S
Template Predicted Secondary structure										.	.	.																																	.	.	.	.	.	.	.	.	.	.	.													.	.	.	.	.	.	.
Template SS confidence
		94	.	.	.	.	.	100	.				.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.												.	.	.	.	.	.	140	.	.	.	.	.								.	.	.	.	150	.	.
		480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		Q	L	Y	Y	A	L	H	A	F	E	I	T	I	P	P	L	R	M	R	R	G	S	I	P	A	L	V	N	N	K	L	R	S	L	E	K	R	F	S	T	R	L	K	I	D	D	D	A	L	A	R	L	V	S	C	A	W	P	G	N	D	F	E	L	Y	S	V	I	E	N	L	A	L	S
Query Conservation
Alig confidence																				.	.	.	.	.	.	.	.															.	.															.
Template Conservation																				.	.	.	.	.	.	.	.															.	.															.
Template Sequence		P	L	Q	S	Q	C	A	I	L	R	Y	S	K	L	S	D	E	D	.	.	.	.	.	.	.	.	V	L	K	R	L	L	Q	I	I	K	L	E	D	V	.	.	K	Y	T	N	D	G	L	E	A	I	I	F	T	A	.	E	G	D	M	R	Q	A	I	N	N	L	Q	S	T	V	A	G
Template Known Secondary structure					T	T	S													.	.	.	.	.	.	.	.													T		.	.		B													.	T	T
Template Predicted Secondary structure																				.	.	.	.	.	.	.	.															.	.															.
Template SS confidence
		153	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170									.	.	.	.	.	.	.	.	.	180	.	.	.	.			.	.	.	.	.	190	.	.	.	.	.	.	.	.		.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions