Job Description P76016 Confidence 99.15% Date Thu Jan 5 12:17:28 GMT 2012 Rank 71 Aligned Residues 207 % Identity 11% Template c1sxjA_ PDB info PDB header:replication Chain: A: PDB Molecule:activator 1 95 kda subunit; PDBTitle: crystal structure of the eukaryotic clamp loader2 (replication factor c, rfc) bound to the dna sliding clamp3 (proliferating cell nuclear antigen, pcna) Resolution 2.85 Å

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		320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.																.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.
Predicted Secondary structure																										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		V	S	H	T	F	A	H	M	P	Q	D	D	P	Q	T	R	R	L	I	H	F	G	R	Q	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	A	A	R	S	S	F	P	V	L	L	C	G	E	E	G	V	G	K	A	L	L	S	Q	A	I	H	N	E	S	E	R	A	A	G	P	Y	I	A	V	N	C
Query Conservation																										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																														.	.	.
Template Conservation																																																																						.	.	.
Template Sequence		A	P	T	N	L	Q	Q	V	C	G	N	K	G	S	V	M	K	L	K	N	W	L	A	N	W	E	N	S	K	K	N	S	F	K	H	A	G	K	D	G	S	G	V	F	R	A	A	M	L	Y	G	P	P	G	I	G	K	T	T	A	A	H	L	V	A	Q	E	L	.	.	.	G	Y	D	I	L	E	Q	N	A
Template Known Secondary structure				S	S	G	G	G			S														T							T	T	T					T	T	S	T	T	S		S							S	T	T	S	S												T	.	.	.	T								T
Template Predicted Secondary structure																																																																						.	.	.
Template SS confidence
		303	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370				.	.	.	.	.	.	.	.	.
		385	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.			.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.
Predicted Secondary structure																																				.	.
Query SS confidence																																				.	.
Query Sequence		E	L	Y	G	D	A	A	L	A	E	E	F	I	G	G	D	R	T	D	N	E	N	G	R	L	S	R	L	E	L	A	H	G	G	.	.	T	L	F	L	E	K	I	E	Y	L	A	V	E	L	Q	S	A	L	L	Q	V	I	K	Q	G	V	I	T	R	L	D	A	R	R	L	I	P	I	D	V	K	V	I	A
Query Conservation																																				.	.
Alig confidence																																				.	.																								.	.	.	.	.	.	.	.	.	.
Template Conservation																																																													.	.	.	.	.	.	.	.	.	.
Template Sequence		S	D	V	R	S	K	T	L	L	N	A	G	V	K	N	A	L	D	N	M	S	V	V	G	Y	F	K	H	Q	N	L	N	G	K	H	F	V	I	I	M	D	E	V	D	G	M	S	G	G	D	R	G	G	V	G	Q	L	A	Q	.	.	.	.	.	.	.	.	.	.	F	C	R	K	T	S	T	P	L	I	L
Template Known Secondary structure		T	S										T	G	G	G	G	T	T				S	T	T	T	T	T				S	S	T	T	S							S	G	G	G			T	T	S	T	T								.	.	.	.	.	.	.	.	.	.						S	S
Template Predicted Secondary structure																																																													.	.	.	.	.	.	.	.	.	.
Template SS confidence
		380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.											.	440	.	.	.	.	.	.	.	.	.
		463	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		T	T	T	A	D	L	A	M	L	V	E	Q	N	R	F	S	R	Q	L	Y	Y	A	L	H	A	F	E	I	T	I	P	P	L	R	M	R	R	G	S	I	P	A	L	V	N	N	K	L	R	S	L	E	K	R	F	S	T	R	L	K	I	D	D	D	A	L	A	R	L	V	S	C	A	W	P	G	N	D	F	E
Query Conservation
Alig confidence						.	.	.	.	.	.																										.	.	.	.	.	.	.	.														.	.																.
Template Conservation						.	.	.	.	.	.																										.	.	.	.	.	.	.	.														.	.																.
Template Sequence		I	C	N	E	.	.	.	.	.	.	R	N	L	P	K	M	R	P	F	D	R	V	C	L	D	I	Q	F	R	R	P	D	A	N	S	.	.	.	.	.	.	.	.	I	K	S	R	L	M	T	I	A	I	R	E	K	.	.	F	K	L	D	P	N	V	I	D	R	L	I	Q	T	T	.	R	G	D	I	R	Q
Template Known Secondary structure				S		.	.	.	.	.	.	T	T	S	S	T	T	G	G	G	T	T	T	S													.	.	.	.	.	.	.	.													T	.	.					T	T									T	.	T	T
Template Predicted Secondary structure						.	.	.	.	.	.																										.	.	.	.	.	.	.	.														.	.																.
Template SS confidence
		454	.	.	.							.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.									.	.	.	.	.	.	.	490	.	.	.	.	.			.	.	.	.	500	.	.	.	.	.	.	.	.	.	510		.	.	.	.	.	.
		543	.	.	.	.	.	.	550	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	Y	S	V	I	E	N	L	A	L	S	S	D	N
Query Conservation
Alig confidence
Template Conservation
Template Sequence		V	I	N	L	L	S	T	I	S	T	T	T	K	T
Template Known Secondary structure							T						S	S
Template Predicted Secondary structure
Template SS confidence
		517	.	.	520	.	.	.	.	.	.	.	.	.	530

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions