Job Description P76016 Confidence 99.62% Date Thu Jan 5 12:17:28 GMT 2012 Rank 28 Aligned Residues 190 % Identity 21% Template c1nsfA_ PDB info PDB header:protein transport Chain: A: PDB Molecule:n-ethylmaleimide sensitive factor; PDBTitle: d2 hexamerization domain of n-ethylmaleimide sensitive factor (nsf) Resolution 1.90 Å

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		325	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.									.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.
Predicted Secondary structure																									.	.	.	.	.	.	.	.
Query SS confidence																									.	.	.	.	.	.	.	.
Query Sequence		A	H	M	P	Q	D	D	P	Q	T	R	R	L	I	H	F	G	R	Q	A	A	R	S	.	.	.	.	.	.	.	.	S	F	P	V	L	L	C	G	E	E	G	V	G	K	A	L	L	S	Q	A	I	H	N	E	S	E	R	A	A	G	P	Y	I	A	V	N	C	E	L	Y	G	D	A	A	L	A	E	E	F
Query Conservation																									.	.	.	.	.	.	.	.
Alig confidence																									.	.	.	.	.	.	.	.																										.	.	.
Template Conservation																																																										.	.	.
Template Sequence		N	G	I	I	K	W	G	D	P	V	T	R	V	L	D	D	G	E	L	L	V	Q	Q	T	K	N	S	D	R	T	P	L	V	S	V	L	L	E	G	P	P	H	S	G	K	T	A	L	A	A	K	I	A	E	E	S	.	.	.	N	F	P	F	I	K	I	C	S	P	D	K	M	I	G	F	S	E	T	A	K
Template Known Secondary structure		T						S																					S	S		S									S	T	T	S	S													.	.	.			S							G	G	G	S	T	T
Template Predicted Secondary structure																																																										.	.	.
Template SS confidence
		505	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.	.	.	.	560				.	.	.	.	.	.	.	.	.	570	.	.	.	.	.	.	.	.	.	580	.
		397	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.				.	.	.	.	420	.	.	.	.	.	.	.	.	.											430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.
Predicted Secondary structure																					.	.	.															.	.	.	.	.	.	.	.	.	.
Query SS confidence																					.	.	.															.	.	.	.	.	.	.	.	.	.
Query Sequence		I	G	G	D	R	T	D	N	E	N	G	R	L	S	R	L	E	L	A	.	.	.	H	G	G	T	L	F	L	E	K	I	E	Y	L	A	.	.	.	.	.	.	.	.	.	.	V	E	L	Q	S	A	L	L	Q	V	I	K	Q	G	V	I	T	R	L	D	A	R	R	L	I	P	I	D	V	K	V	I	A	T
Query Conservation																					.	.	.															.	.	.	.	.	.	.	.	.	.
Alig confidence						.	.	.	.	.	.	.	.								.	.	.															.	.	.	.	.	.	.	.	.	.													.	.	.	.	.	.	.	.
Template Conservation						.	.	.	.	.	.	.	.																																															.	.	.	.	.	.	.	.
Template Sequence		C	Q	A	M	.	.	.	.	.	.	.	.	K	K	I	F	D	D	A	Y	K	S	Q	L	S	C	V	V	V	D	D	I	E	R	L	L	D	Y	V	P	I	G	P	R	F	S	N	L	V	L	Q	A	L	L	V	L	L	K	.	.	.	.	.	.	.	.	K	A	P	P	Q	G	R	K	L	L	I	I	G	T
Template Known Secondary structure						.	.	.	.	.	.	.	.									T	S	S													T	T		B	T	T	T	T	B													T	T	.	.	.	.	.	.	.	.				S	T	T
Template Predicted Secondary structure						.	.	.	.	.	.	.	.																																															.	.	.	.	.	.	.	.
Template SS confidence
		582	.	.	.									.	.	.	.	590	.	.	.	.	.	.	.	.	.	600	.	.	.	.	.	.	.	.	.	610	.	.	.	.	.	.	.	.	.	620	.	.	.	.	.	.	.	.	.	630	.									.	.	.	.	.	.	.	.	640	.	.	.	.	.
		464	.	.			.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.
Predicted Secondary structure					.	.
Query SS confidence					.	.
Query Sequence		T	T	A	.	.	D	L	A	M	L	V	E	Q	N	R	F	S	R	Q	L	Y	Y	A	L	H	A	F	E	I	T	I	P	P	L	R	M	R	R	G	S	I	P	A	L	V	N	N	K	L	R	S	L	E	K	R	F	S	T	R	L	K	I	D	D	D	A	L	A	R	L	V	S	C	A	W	P	G	N	D	F
Query Conservation					.	.
Alig confidence					.	.															.	.	.	.	.	.	.	.	.																				.	.	.	.	.	.	.	.
Template Conservation																					.	.	.	.	.	.	.	.	.																				.	.	.	.	.	.	.	.
Template Sequence		T	S	R	K	D	V	L	Q	E	M	E	M	L	N	A	F	S	T	T	.	.	.	.	.	.	.	.	.	I	H	V	P	N	I	A	T	G	E	Q	L	L	E	A	L	E	L	L	.	.	.	.	.	.	.	.	G	N	F	K	D	K	E	R	T	T	I	A	Q	Q	V	K	G	K	K	V	W	I	G	I	K
Template Known Secondary structure			S								T	T	G	G	G	T	S	S			.	.	.	.	.	.	.	.	.																				.	.	.	.	.	.	.	.	T		S													T	T	S
Template Predicted Secondary structure																					.	.	.	.	.	.	.	.	.																				.	.	.	.	.	.	.	.
Template SS confidence
		646	.	.	.	650	.	.	.	.	.	.	.	.	.	660	.	.	.	.										.	.	.	.	.	670	.	.	.	.	.	.	.	.	.	680	.	.	.									.	.	.	.	.	.	690	.	.	.	.	.	.	.	.	.	700	.	.	.	.	.	.	.	.
		542	.	.	.	.	.	.	.	550
Predicted Secondary structure
Query SS confidence
Query Sequence		E	L	Y	S	V	I	E	N	L
Query Conservation
Alig confidence
Template Conservation
Template Sequence		K	L	L	M	L	I	E	M	S
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		709	710	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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