Job Description P76016 Confidence 98.75% Date Thu Jan 5 12:17:28 GMT 2012 Rank 91 Aligned Residues 182 % Identity 18% Template c1jr3E_ PDB info PDB header:transferase Chain: E: PDB Molecule:dna polymerase iii, delta' subunit; PDBTitle: crystal structure of the processivity clamp loader gamma2 complex of e. coli dna polymerase iii Resolution 2.70 Å

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		327	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.																						.	380	.	.	.	.	.
Predicted Secondary structure																																																						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																																						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		M	P	Q	D	D	P	Q	T	R	R	L	I	H	F	G	R	Q	A	A	R	S	S	F	P	V	L	L	C	G	E	E	G	V	G	K	A	L	L	S	Q	A	I	H	N	E	S	E	R	A	A	G	P	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	Y	I	A	V	N	C	E
Query Conservation																																																						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																			.																																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																			.
Template Sequence		Y	P	W	L	R	P	D	F	E	K	L	V	A	S	Y	Q	A	.	G	R	G	H	H	A	L	L	I	Q	A	L	P	G	M	G	D	D	A	L	I	Y	A	L	S	R	Y	L	L	C	Q	Q	P	Q	G	H	K	S	C	G	H	C	R	G	C	Q	L	M	Q	A	G	T	H	P	D	Y	Y	T	L	A	P	E
Template Known Secondary structure			T	T										T	T	T	T	T	.	S				S								T	T	S	S													T		S	S			S	S	S			S		S								T	S			S	S
Template Predicted Secondary structure																			.
Template SS confidence
		4	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20		.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.
		386	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	Y	G	D	A	A	L	A	E	E	F	I	G	G	D	R	T	D	N	E	N	G	R	L	S	R	L	E	L	A	H	G	G	T	L	F	L	E	K	I	E	Y	L	A	V	E	L	Q	S	A	L	L	Q	V	I	K	Q	G	V	I	T	R	L	D	A	R	R	L	I	P	I	D	V	K	V	I	A	T	T	T
Query Conservation
Alig confidence																														.	.	.	.	.																									.	.	.	.	.	.	.	.	.	.	.
Template Conservation																														.	.	.	.	.																									.	.	.	.	.	.	.	.	.	.	.
Template Sequence		K	G	K	N	T	L	G	V	D	A	V	R	E	V	T	E	K	L	N	E	H	A	R	L	G	G	A	K	.	.	.	.	.	V	V	W	V	T	D	A	A	L	L	T	D	A	A	A	N	A	L	L	K	T	L	E	E	.	.	.	.	.	.	.	.	.	.	.	P	P	A	E	T	W	F	F	L	A	T	R
Template Known Secondary structure		T	T	S	S	S	B													S	S			T	T	S	S			.	.	.	.	.					S		G	G	G	B														S	.	.	.	.	.	.	.	.	.	.	.			T	T								S
Template Predicted Secondary structure																														.	.	.	.	.																									.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		83	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110						.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.												.	.	.	.	.	140	.	.	.	.	.	.
		466	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	D	L	A	M	L	V	E	Q	N	R	F	S	R	Q	L	Y	Y	A	L	H	A	F	E	I	T	I	P	P	L	R	M	R	R	G	S	I	P	A	L	V	N	N	K	L	R	S	L	E	K	R	F	S	T	R	L	K	I	D	D	D	A	L	A	R	L	V	S	C	A	W	P	G	N	D	F	E	L	Y	S
Query Conservation
Alig confidence		.	.	.	.	.	.	.																										.	.	.	.	.	.	.	.										.	.	.	.	.	.	.															.
Template Conservation		.	.	.	.	.	.	.																										.	.	.	.	.	.	.	.										.	.	.	.	.	.	.															.
Template Sequence		.	.	.	.	.	.	.	E	P	E	R	L	L	A	T	L	R	S	R	C	R	L	H	Y	L	A	P	P	P	E	Q	Y	.	.	.	.	.	.	.	.	A	V	T	W	L	S	R	E	V	.	.	.	.	.	.	.	T	M	S	Q	D	A	L	L	A	A	L	R	L	S	.	A	G	S	P	G	A	A	L	A
Template Known Secondary structure		.	.	.	.	.	.	.		S	T	T	S		T	T	T	T	T	T	S													.	.	.	.	.	.	.	.									S	.	.	.	.	.	.	.													T	T	.	T	T
Template Predicted Secondary structure		.	.	.	.	.	.	.																										.	.	.	.	.	.	.	.										.	.	.	.	.	.	.															.
Template SS confidence
									147	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.									.	.	.	.	.	.	.	.	180								.	.	.	.	.	.	.	.	.	190	.	.	.	.		.	.	.	.	.	200	.	.	.
		546	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		V	I	E
Query Conservation
Alig confidence
Template Conservation
Template Sequence		L	F	Q
Template Known Secondary structure				S
Template Predicted Secondary structure
Template SS confidence
		204	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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