Job Description P77481 Confidence 100.00% Date Thu Jan 5 12:29:44 GMT 2012 Rank 9 Aligned Residues 357 % Identity 49% Template c2d62A_ PDB info PDB header:sugar binding protein Chain: A: PDB Molecule:multiple sugar-binding transport atp-binding PDBTitle: crystal structure of multiple sugar binding transport atp-2 binding protein Resolution 2.10 Å

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		2	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.
Predicted Secondary structure																																																																													.	.	.	.	.
Query SS confidence																																																																													.	.	.	.	.
Query Sequence		A	Q	L	S	L	Q	H	I	Q	K	I	Y	D	N	Q	V	H	V	V	K	D	F	N	L	E	I	A	D	K	E	F	I	V	F	V	G	P	S	G	C	G	K	S	T	T	L	R	M	I	A	G	L	E	E	I	S	G	G	D	L	L	I	D	G	K	R	M	N	D	V	P	A	K	A	R	.	.	.	.	.
Query Conservation																																																																													.	.	.	.	.
Alig confidence																	.																																																												.	.	.	.	.
Template Conservation																	.
Template Sequence		A	E	V	K	L	I	N	I	W	K	R	F	G	D	V	.	T	A	V	K	D	L	S	L	E	I	K	D	G	E	F	L	V	L	L	G	P	S	G	C	G	K	T	T	T	L	R	X	I	A	G	L	E	E	P	T	R	G	Q	I	Y	I	E	D	N	L	V	A	D	P	E	K	G	V	F	V	P	P	K	E
Template Known Secondary structure			S											T	T		.												T	T								S	T	T	S	S										T	S	S			S							T	T						G	G	G	T
Template Predicted Secondary structure																	.
Template SS confidence
		5	.	.	.	.	10	.	.	.	.	.	.	.	.	.		20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.
			77	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.
Predicted Secondary structure		.
Query SS confidence		.
Query Sequence		.	N	I	A	M	V	F	Q	N	Y	A	L	Y	P	H	M	T	V	Y	D	N	M	A	F	G	L	K	M	Q	K	I	A	K	E	V	I	D	E	R	V	N	W	A	A	Q	I	L	G	L	R	E	Y	L	K	R	K	P	G	A	L	S	G	G	Q	R	Q	R	V	A	L	G	R	A	I	V	R	E	A	G	V
Query Conservation		.
Alig confidence		.
Template Conservation
Template Sequence		R	D	V	A	X	V	F	Q	S	Y	A	L	Y	P	H	X	T	V	Y	D	N	I	A	F	P	L	K	L	R	K	V	P	K	Q	E	I	D	K	R	V	R	E	V	A	E	X	L	G	L	T	E	L	L	N	R	K	P	R	E	L	S	G	G	Q	R	Q	R	V	A	L	G	R	A	I	I	R	R	P	K	V
Template Known Secondary structure			T							S					T	T	S												T	T	T																	T	T		G	G	G	T	T			G	G	G	S															S	S			S
Template Predicted Secondary structure
Template SS confidence
		84	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.
		156	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		F	L	M	D	E	P	L	S	N	L	D	A	K	L	R	V	Q	M	R	A	E	I	S	K	L	H	Q	K	L	N	T	T	M	I	Y	V	T	H	D	Q	T	E	A	M	T	M	A	T	R	I	V	I	M	K	D	G	I	V	Q	Q	V	G	A	P	K	T	V	Y	N	Q	P	A	N	M	F	V	S	G	F	I
Query Conservation
Alig confidence
Template Conservation
Template Sequence		F	L	X	D	E	P	L	S	N	L	D	A	K	L	R	V	K	X	R	A	E	L	K	K	L	Q	R	Q	L	G	V	T	T	I	Y	V	T	H	D	Q	V	E	A	X	T	X	G	D	R	I	A	V	X	N	K	G	E	L	Q	Q	V	G	T	P	D	E	V	Y	Y	K	P	V	N	T	F	V	A	G	F	I
Template Known Secondary structure						S	T	T	T	T																					T								S										S							T	T														S		S	B							S
Template Predicted Secondary structure
Template SS confidence
		164	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.
		236	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.		.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290							.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.
Predicted Secondary structure																			.																																							.	.	.	.	.	.
Query SS confidence																			.																																							.	.	.	.	.	.
Query Sequence		G	S	P	A	M	N	F	I	R	G	T	I	D	G	D	K	F	.	V	T	E	T	L	K	L	T	I	P	E	E	K	L	A	V	L	K	T	Q	E	S	L	H	K	P	I	V	M	G	I	R	P	E	D	I	H	P	.	.	.	.	.	.	D	A	Q	E	E	N	N	I	S	A	K	I	S	V	A	E	L	T
Query Conservation																			.																																							.	.	.	.	.	.
Alig confidence																			.																																							.	.	.	.	.	.
Template Conservation
Template Sequence		G	S	P	P	X	N	F	L	D	A	T	I	T	D	D	G	F	L	D	F	G	E	F	K	L	K	L	L	Q	D	Q	F	E	V	L	E	E	E	N	X	V	G	K	E	V	I	F	G	I	R	P	E	D	V	H	D	A	S	F	T	H	I	D	V	P	E	E	N	T	V	K	A	T	V	D	I	I	E	N	L
Template Known Secondary structure		S	S	S											T	T	S					S	S																T	T		T	T									G	G	G				G	G	G		S				T	T	T	S
Template Predicted Secondary structure
Template SS confidence
		244	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.
		309	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		G	A	E	F	M	L	Y	T	T	V	G	G	H	E	L	V	V	R	A	G	A	L	N	D	Y	H	A	G	E	N	I	T	I	H	F	D	M	T	K	C	H	F	F	D	A	E	T	E	I	A	I
Query Conservation
Alig confidence
Template Conservation
Template Sequence		G	G	E	K	I	V	H	L	R	R	G	N	I	S	F	T	A	K	F	P	K	E	S	K	V	R	E	G	D	E	V	S	V	V	F	D	X	K	K	I	H	I	F	R	K	D	T	E	K	A	I
Template Known Secondary structure		S	S									T	T									T	T					T	T									G	G	G						T	T	T		B	B
Template Predicted Secondary structure
Template SS confidence
		324	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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