Return to main results Retrieve Phyre Job Id

Job DescriptionP77481
Confidence100.00%DateThu Jan 5 12:29:44 GMT 2012
Rank4Aligned Residues356
% Identity49%Templatec1q1bD_
PDB info PDB header:transport proteinChain: D: PDB Molecule:maltose/maltodextrin transport atp-binding protein malk; PDBTitle: crystal structure of e. coli malk in the nucleotide-free form
Resolution2.80 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   4.....10.........20.........30.........40.........50.........60.........70.........80...
Predicted Secondary structure 































Query SS confidence 















































































Query Sequence  LSLQHIQKIYDNQVHVVKDFNLEIADKEFIVFVGPSGCGKSTTLRMIAGLEEISGGDLLIDGKRMNDVPAKARNIAMVFQ
Query Conservation 
    
          
  

  
  

   
 
  







  
 

     
 
   
               
  
Alig confidence 












.

































































Template Conservation 
    
 
     .  
  


 
  


  
 
 








  
 

  
  
 
   
  
       
       
Template Sequence  VQLQNVTKAWGEV. VVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETITSGDLFIGEKRMNDTPPAERGVGMVFQ
Template Known Secondary structure 
TT.

TT

SGGGSTTTSS


SSTT
TT

SSTT



B
S
Template Predicted Secondary structure 


.

































Template SS confidence 















































































   4.....10...... ...20.........30.........40.........50.........60.........70.........80..
 
   84.....90.........100.........110.........120.........130.........140.........150.........160...
Predicted Secondary structure 

















































Query SS confidence 















































































Query Sequence  NYALYPHMTVYDNMAFGLKMQKIAKEVIDERVNWAAQILGLREYLKRKPGALSGGQRQRVALGRAIVREAGVFLMDEPLS
Query Conservation     
     
  

                                     



  


 




   
 






 
Alig confidence 















































































Template Conservation          

  
                                      




 


 




   
 








Template Sequence  SYALYPHLSVAENMSFGLKLAGAKKEVINQRVNQVAEVLQLAHLLDRKPKALSGGQRQRVAIGRTLVAEPSVFLLDEPLS
Template Known Secondary structure 




TTS
TTTTTTSSSSTTTTTTTTTGGGT
TT
SS



GGGTTTSSSSTTTT

S
BSSTTT
Template Predicted Secondary structure 









































Template SS confidence 















































































   83......90.........100.........110.........120.........130.........140.........150.........160..
 
   164.....170.........180.........190.........200.........210.........220.........230.........240...
Predicted Secondary structure 

























Query SS confidence 















































































Query Sequence  NLDAKLRVQMRAEISKLHQKLNTTMIYVTHDQTEAMTMATRIVIMKDGIVQQVGAPKTVYNQPANMFVSGFIGSPAMNFI
Query Conservation   

      
   
  
    
 


 


   
     


 

  
 
   
    
   
     
   
       
Alig confidence 















































































Template Conservation   

      
   
  
    
 


 


   
    



 

  
 
   
   

   
     
   
    
  
Template Sequence  NLDAALRVQMRIEISRLHKRLGRTMIYVTHDQVEAMTLADKIVVLDAGRVAQVGKPLELYHYPADRFVAGFIGSPKMNFL
Template Known Secondary structure  T

TTTTT

S

STT
S
SBSSSS

Template Predicted Secondary structure 


























Template SS confidence 















































































   163......170.........180.........190.........200.........210.........220.........230.........240..
 
   244.....250.........260...... ...270.........280.........290.........300.........310.........
Predicted Secondary structure 













...
























.
Query SS confidence 






















. . .




















































.
Query Sequence  RGTIDGDKFVTETLKLTIPEEKL. . . AVLKTQESLHKPIVMGIRPEDIHPDAQEENNISAKISVAELTGAEFMLYTTVG.
Query Conservation                         ...            
 
 



 
 
       
 
 
  
   
    
 
  
.
Alig confidence 






















...




















































.
Template Conservation                                            


  
           
 
      
    
      
Template Sequence  PVKVTATAIDQVQVELPMPNRQQVWLPVESRDVQVGANMSLGIRPEHLLPSDIADVILEGEVQVVEQLGNETQIHIQIPS
Template Known Secondary structure  TT
SSTT


B

TT

TT

GGG
B
S
S
SS
SS
TT
Template Predicted Secondary structure 










































Template SS confidence 















































































   243......250.........260.........270.........280.........290.........300.........310.........320..
 
   320.........330.........340.........350.........360
Predicted Secondary structure  .

















Query SS confidence  .








































Query Sequence  . GHELVVRAGALNDYHAGENITIHFDMTKCHFFDAETEIAIR
Query Conservation  .
  
         
  

 
 
      




 

    
Alig confidence  .








































Template Conservation                   
  
 
    
 
 

  
    

Template Sequence  IRQNLVYRQNDVVLVEEGATFAIGLPPERCHLFREDGTACRR
Template Known Secondary structure 
SS
S




TT


GGG

TTSBB

B
Template Predicted Secondary structure 


















Template SS confidence 









































   323......330.........340.........350.........360....
 
Download:Text version FASTA pairwise alignment 3D Model in PDB format

View in Jmol

Send structure to FirstGlance for more viewing options


Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
Disclaimer
Terms and Conditions