Job Description P77481 Confidence 100.00% Date Thu Jan 5 12:29:44 GMT 2012 Rank 5 Aligned Residues 340 % Identity 33% Template c1oxtB_ PDB info PDB header:transport protein Chain: B: PDB Molecule:abc transporter, atp binding protein; PDBTitle: crystal structure of glcv, the abc-atpase of the glucose abc2 transporter from sulfolobus solfataricus Resolution 2.10 Å

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		1	.	.	.	.	.	.	.	.	10	.	.	.	.		.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70						.	.	.	.
Predicted Secondary structure																.																																																									.	.	.	.	.
Query SS confidence																.																																																									.	.	.	.	.
Query Sequence		M	A	Q	L	S	L	Q	H	I	Q	K	I	Y	D	.	N	Q	V	H	V	V	K	D	F	N	L	E	I	A	D	K	E	F	I	V	F	V	G	P	S	G	C	G	K	S	T	T	L	R	M	I	A	G	L	E	E	I	S	G	G	D	L	L	I	D	G	K	R	M	N	D	.	.	.	.	.	V	P	A	K
Query Conservation																.																																																									.	.	.	.	.
Alig confidence																.																																																									.	.	.	.	.
Template Conservation
Template Sequence		M	V	R	I	I	V	K	N	V	S	K	V	F	K	K	G	K	V	V	A	L	D	N	V	N	I	N	I	E	N	G	E	R	F	G	I	L	G	P	S	G	A	G	K	T	T	F	M	R	I	I	A	G	L	D	V	P	S	T	G	E	L	Y	F	D	D	R	L	V	A	S	N	G	K	L	I	V	P	P	E
Template Known Secondary structure															G	G	G	T													T	T									T	T	S	S										T	S	S			S							T	T						T	T			S	S		G	G
Template Predicted Secondary structure
Template SS confidence
		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80
		75	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	R	N	I	A	M	V	F	Q	N	Y	A	L	Y	P	H	M	T	V	Y	D	N	M	A	F	G	L	K	M	Q	K	I	A	K	E	V	I	D	E	R	V	N	W	A	A	Q	I	L	G	L	R	E	Y	L	K	R	K	P	G	A	L	S	G	G	Q	R	Q	R	V	A	L	G	R	A	I	V	R	E	A	G
Query Conservation
Alig confidence
Template Conservation
Template Sequence		D	R	K	I	G	M	V	F	Q	T	W	A	L	Y	P	N	L	T	A	F	E	N	I	A	F	P	L	T	N	M	K	M	S	K	E	E	I	R	K	R	V	E	E	V	A	K	I	L	D	I	H	H	V	L	N	H	F	P	R	E	L	S	G	G	Q	Q	Q	R	V	A	L	A	R	A	L	V	K	D	P	S
Template Known Secondary structure		G	S							T	T					T	T	S								G	G	G	T	T	S	S																	T	T		G	G	G	T	T	S		G	G	G	S															T	T			S
Template Predicted Secondary structure
Template SS confidence
		81	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160
		155	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		V	F	L	M	D	E	P	L	S	N	L	D	A	K	L	R	V	Q	M	R	A	E	I	S	K	L	H	Q	K	L	N	T	T	M	I	Y	V	T	H	D	Q	T	E	A	M	T	M	A	T	R	I	V	I	M	K	D	G	I	V	Q	Q	V	G	A	P	K	T	V	Y	N	Q	P	A	N	M	F	V	S	G	F
Query Conservation
Alig confidence
Template Conservation
Template Sequence		L	L	L	L	D	E	P	F	S	N	L	D	A	R	M	R	D	S	A	R	A	L	V	K	E	V	Q	S	R	L	G	V	T	L	L	V	V	S	H	D	P	A	D	I	F	A	I	A	D	R	V	G	V	L	V	K	G	K	L	V	Q	V	G	K	P	E	D	L	Y	D	N	P	V	S	I	Q	V	A	S	L
Template Known Secondary structure							S	S	S	S	S	S																												S										S							T	T														S		S	S
Template Predicted Secondary structure
Template SS confidence
		161	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240
		235	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.							.	.	.	.	300	.	.	.	.	.	.	.	.
Predicted Secondary structure																																																															.	.	.	.	.	.
Query SS confidence																																																															.	.	.	.	.	.
Query Sequence		I	G	S	P	A	M	N	F	I	R	G	T	I	D	G	D	K	F	V	T	E	T	L	K	L	T	I	P	E	E	K	L	A	V	L	K	T	Q	E	S	L	H	K	P	I	V	M	G	I	R	P	E	D	I	H	P	D	A	Q	E	E	.	.	.	.	.	.	N	N	I	S	A	K	I	S	V	A	E	L	T
Query Conservation																																																															.	.	.	.	.	.
Alig confidence						.	.																							.	.	.	.	.	.	.	.	.	.	.																							.	.	.	.	.	.
Template Conservation						.	.																							.	.	.	.	.	.	.	.	.	.	.
Template Sequence		I	G	E	I	.	.	N	E	L	E	G	K	V	T	N	E	G	V	V	I	G	S	L	R	F	P	V	S	.	.	.	.	.	.	.	.	.	.	.	V	S	S	D	R	A	I	I	G	I	R	P	E	D	V	K	L	S	K	D	V	I	K	D	D	S	W	I	L	V	G	K	G	K	V	K	V	I	G	Y	Q
Template Known Secondary structure			S			.	.									S	S	S				T	T				S			.	.	.	.	.	.	.	.	.	.	.		S	S	S								G	G	G					S	S					T	T
Template Predicted Secondary structure						.	.																							.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		241	.	.	.			.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.												.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.
		309	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		G	A	E	F	M	L	Y	T	T	V	G	G	H	E	L	V	V	R	A	G	A	L	N	D	Y	H	A	G	E	N	I	T	I	H	F	D	M	T	K	C	H	F	F	D	A
Query Conservation
Alig confidence
Template Conservation
Template Sequence		G	G	L	F	R	I	T	I	T	P	L	D	S	E	E	E	I	F	T	Y	S	D	H	P	I	H	S	G	E	E	V	L	V	Y	V	R	K	D	K	I	K	V	F	E	K
Template Known Secondary structure		T	T									T	T										S	S				T	T									G	G	G
Template Predicted Secondary structure
Template SS confidence
		308	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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