Return to main results Retrieve Phyre Job Id

Job DescriptionP76500
Confidence99.55%DateWed Jan 25 15:21:09 GMT 2012
Rank15Aligned Residues117
% Identity18%Templatec3bwuF_
PDB info PDB header:chaperone, structural, membrane proteinChain: F: PDB Molecule:protein fimf; PDBTitle: crystal structure of the ternary complex of fimd (n-terminal domain,2 fimdn) with fimc and the n-terminally truncated pilus subunit fimf3 (fimft)
Resolution1.76 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   31........40.........50.........60.........70.........80.........90.........100 .....
Predicted Secondary structure 










































.....


Query SS confidence 





































































. . . . .




Query Sequence  SPPTCSISGGKTIEVEFRDLIIDDINGNYGRKEVPYELTCDSTTRHPDWEMTLTWTGTQTSFNDAAIETD. . . . . VPGFG
Query Conservation     
 
        
  
 
               
 
    
                           .....  


Alig confidence 













.............



















.





















.....




Template Conservation     
 
    
  
.............
       
 
 
  
    .  
   
 
                  
 


Template Sequence  DNGCSVAAESTNFI. . . . . . . . . . . . . GATTPVVPFRILLSPCGNAV. SAVKVGFTGVADSHNANLLALENTVSAASGLG
Template Known Secondary structure 








.............

B



TT
.


B
SS
TTS



TTB
BS
Template Predicted Secondary structure 







.............











.
















Template SS confidence 















































































   13......20...... ...30.........40...... ...50.........60.........70........
 
   106...110 ........ .120.........130.........140.........150.........160..
Predicted Secondary structure 
.




.....















Query SS confidence 




.







. . . . .











































Query Sequence  IELQH. DGQRFKLN. . . . . TPLAINATDFTQKPKLEAVPVKASDAVLSDTNFSAYATLRVDYQ
Query Conservation 
 
  .        .....                 
            
   
 

  
 

Alig confidence 




.







.....























.


















Template Conservation 
 
    
  
                     
   
 
    .  

 
   
  

 
 

Template Sequence  IQLLNEQQNQIPLNAPSSALSWTTLTPGKPNTLNFYARLMATQ. VPVTAGHINATATFTLEYQ
Template Known Secondary structure 
TT

B

TT

GGG



TTS
SS.SS
B

B





Template Predicted Secondary structure 


















.




Template SS confidence 






























































   93......100.........110.........120.........130..... ....140.........150....
 
Download:Text version FASTA pairwise alignment 3D Model in PDB format

View in Jmol

Send structure to FirstGlance for more viewing options


Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
Disclaimer
Terms and Conditions