Job Description P05827 Confidence 87.49% Date Thu Jan 5 10:58:58 GMT 2012 Rank 196 Aligned Residues 90 % Identity 10% Template d1ku9a_ SCOP info DNA/RNA-binding 3-helical bundle "Winged helix" DNA-binding domain DNA-binding protein Mj223 Resolution 2.80

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		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.				.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.					.	50	.	.	.	.	.	.	.	.	.	60	.			.	.	.	.	.	.	.	.	70	.
Predicted Secondary structure																		.	.	.																																	.	.	.	.														.	.
Query SS confidence																		.	.	.																																	.	.	.	.														.	.
Query Sequence		M	D	L	R	D	L	K	T	F	L	H	L	A	E	S	R	.	.	.	H	F	G	R	S	A	R	A	M	H	V	S	P	S	T	L	S	R	Q	I	Q	R	L	E	E	D	L	G	Q	P	L	F	.	.	.	.	V	R	D	N	R	T	V	T	L	T	E	A	G	.	.	E	E	L	R	V	F	A	Q	Q	T
Query Conservation																		.	.	.																																	.	.	.	.														.	.
Alig confidence																		.	.	.																																	.	.	.	.														.	.
Template Conservation
Template Sequence		L	N	K	S	V	G	A	V	Y	A	I	L	Y	L	S	D	K	P	L	T	I	S	D	I	X	E	E	L	K	I	S	K	G	N	V	S	X	S	L	K	K	L	E	E	L	G	F	V	R	K	V	W	I	K	G	E	R	K	N	Y	Y	E	A	V	D	G	F	S	S	I	K	D	I	A	K	R	K	H	D	L
Template Known Secondary structure																	S	S												T																T	T	S							T	T		S	S
Template Predicted Secondary structure
Template SS confidence
		24	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.
		72	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90
Predicted Secondary structure
Query SS confidence
Query Sequence		L	L	Q	Y	Q	Q	L	R	H	T	I	D	Q	Q	G	P	S	L	S
Query Conservation
Alig confidence
Template Conservation
Template Sequence		I	A	K	T	Y	E	D	L	K	K	L	E	E	K	C	N	E	E	E
Template Known Secondary structure																S		T	T	S
Template Predicted Secondary structure
Template SS confidence
		104	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions