Job Description P05827 Confidence 94.66% Date Thu Jan 5 10:58:58 GMT 2012 Rank 123 Aligned Residues 89 % Identity 11% Template c3r0aB_ PDB info PDB header:transcription regulator Chain: B: PDB Molecule:putative transcriptional regulator; PDBTitle: possible transcriptional regulator from methanosarcina mazei go1 (gi2 21227196) Resolution 2.31 Å

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		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.					.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.				.	.	.	.	.	.				.	.	60	.	.	.	.	.	.	.	.	.	70
Predicted Secondary structure																		.	.	.	.																																				.	.	.							.	.	.
Query SS confidence																		.	.	.	.																																				.	.	.							.	.	.
Query Sequence		M	D	L	R	D	L	K	T	F	L	H	L	A	E	S	R	.	.	.	.	H	F	G	R	S	A	R	A	M	H	V	S	P	S	T	L	S	R	Q	I	Q	R	L	E	E	D	L	G	Q	P	L	F	V	R	D	.	.	.	N	R	T	V	T	L	.	.	.	T	E	A	G	E	E	L	R	V	F	A	Q	Q
Query Conservation																		.	.	.	.																																				.	.	.							.	.	.
Alig confidence																		.	.	.	.																									.											.	.	.							.	.	.
Template Conservation																																														.
Template Sequence		L	T	K	A	D	L	N	V	X	K	S	F	L	N	E	P	D	R	W	I	D	T	D	A	L	S	K	S	L	K	L	D	V	S	T	V	Q	R	S	V	K	K	L	H	.	E	K	E	I	L	Q	R	S	Q	Q	N	L	D	G	G	G	Y	V	Y	I	Y	K	I	Y	S	K	N	Q	I	R	N	I	I	Q	K
Template Known Secondary structure																S	T	T			B									T	T															.		T	T	S									T	T	S
Template Predicted Secondary structure																																														.
Template SS confidence
		21	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.		.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.
		71	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90
Predicted Secondary structure
Query SS confidence
Query Sequence		T	L	L	Q	Y	Q	Q	L	R	H	T	I	D	Q	Q	G	P	S	L	S
Query Conservation
Alig confidence
Template Conservation
Template Sequence		I	V	Q	S	W	A	D	R	L	G	Q	E	L	K	E	W	E	N	G	G
Template Known Secondary structure																			T	T	T
Template Predicted Secondary structure
Template SS confidence
		100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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