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Job DescriptionP05827
Confidence77.97%DateThu Jan 5 10:58:58 GMT 2012
Rank228Aligned Residues207
% Identity10%Templatec3k2dA_
PDB info PDB header:immune systemChain: A: PDB Molecule:abc-type metal ion transport system, periplasmic component; PDBTitle: crystal structure of immunogenic lipoprotein a from vibrio vulnificus
Resolution2.60 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   86...90.........100.........110.........120.........130.........140.........150.........160.....
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Query Sequence  GPSLSGELHIFCSVTAAYSHLPPILDRFRAEHPSVEIKLTTGDAADAMEKVVTGEADLAIAGKPETLPGAVAFSMLENLA
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Template Sequence  GHMDTSKVKVGVMAGAEAQVAEVAAKVAKEKYGLDVELVTFTDYVTPNAALDDGSIDMNAFQHKPYLDRQVEDRDYKLT.
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   26...30.........40.........50.........60.........70.........80.........90.........100....
 
   166...170.........180.........190.........200.........210..... ....220.......
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Query Sequence  VVLIAPALPCPVRNQVSVEKPDWSTVPFIMADQGPVRRRIELWFRRNKIS. . . . . . . . . . . . . . . . . . NPMIYATVGGHE
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Template Sequence  IAGNTFVYPIAGYSKQVKSVAALADGVRIAVPNDPTNLGRSLLLLEQQGLIKLRPEVGLLATVRDIVENPKNITIMELDA
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   105....110.........120.........130.........140.........150.........160.........170.........180....
 
   228.230.........240.........250.........260.........270.........280.........290.....
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Query Sequence  AMVSMVALGCGVALLPEVVLENSPEPVRNRVMILERSDEKTPFELGVCAQKKRLHEPLIEAFWKILPN
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Template Sequence  AQLPRSLDDVALSIINTTYASS. . INLTPEKDGVFVEDKESPYVNLIVARQDNVQNENVQNFVKAYQT
Template Known Secondary structure  GGTTTSS
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   185....190.........200...... ...210.........220.........230.........240.........250
 
Download:Text version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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Lawrence Kelley, Benjamin Jefferys 
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