Job Description P0AA70 Confidence 4.89% Date Thu Jan 5 11:12:04 GMT 2012 Rank 24 Aligned Residues 233 % Identity 13% Template c3hd6A_ PDB info PDB header:membrane protein, transport protein Chain: A: PDB Molecule:ammonium transporter rh type c; PDBTitle: crystal structure of the human rhesus glycoprotein rhcg Resolution 2.10 Å

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		5	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60								.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.
Predicted Secondary structure																																																										.	.	.	.	.	.	.
Query SS confidence																																																										.	.	.	.	.	.	.
Query Sequence		Q	L	L	P	L	F	G	A	L	F	A	L	Y	I	I	W	G	S	T	Y	F	V	I	R	I	G	V	E	S	W	P	P	L	M	M	A	G	V	R	F	L	A	A	G	I	L	L	L	A	F	L	L	L	R	G	H	.	.	.	.	.	.	.	K	L	P	P	L	R	P	L	L	N	A	A	L	I	G	L	L
Query Conservation																																																										.	.	.	.	.	.	.
Alig confidence																																																										.	.	.	.	.	.	.
Template Conservation
Template Sequence		S	P	I	Q	L	L	I	M	T	F	F	Q	V	T	L	F	A	V	N	E	F	I	L	L	N	L	L	K	V	K	D	A	G	G	S	M	T	I	H	T	F	G	A	Y	F	G	L	T	V	T	R	I	L	Y	R	R	N	L	E	Q	S	K	E	R	Q	N	S	V	Y	Q	S	D	L	F	A	M	I	G	T	L
Template Known Secondary structure																										T	T	S					T	T		T	T	T	T															T			T	T	G	G	G	G	T	T	T	S	S
Template Predicted Secondary structure
Template SS confidence
		147	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.
		78	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.						.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.		140	.	.	.	.	.	.	.	.	.	150	.
Predicted Secondary structure																															.	.	.	.	.																																		.
Query SS confidence																															.	.	.	.	.																																		.
Query Sequence		L	L	A	V	G	N	G	M	V	T	V	A	E	H	Q	N	V	P	S	G	I	A	A	V	V	V	A	T	V	.	.	.	.	.	P	L	F	T	L	C	F	S	R	L	F	G	I	K	T	R	K	L	E	W	V	G	I	A	I	G	L	A	G	I	I	M	L	.	N	S	G	G	N	L	S	G	N	P	W	G
Query Conservation																															.	.	.	.	.																																		.
Alig confidence																															.	.	.	.	.																																		.
Template Conservation
Template Sequence		F	L	W	M	Y	W	P	S	F	N	S	A	I	S	Y	H	G	D	S	Q	H	R	A	A	I	N	T	Y	C	S	L	A	A	C	V	L	T	S	V	A	I	S	S	A	L	H	K	K	G	K	L	D	M	V	H	I	Q	N	A	T	L	A	G	G	V	A	V	G	T	A	A	E	M	M	L	M	P	Y	G	A
Template Known Secondary structure											T	T	T	T		S	S																													T	S	T	T											G	G	G						T	T	T	T	T	T	T		S
Template Predicted Secondary structure
Template SS confidence
		227	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.
		152	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.						.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.
Predicted Secondary structure																		.	.	.	.	.
Query SS confidence																		.	.	.	.	.
Query Sequence		A	I	L	I	L	I	G	S	I	S	W	A	F	G	S	V	.	.	.	.	.	Y	G	S	R	I	T	L	P	V	G	M	M	A	G	A	I	E	M	L	A	A	G	V	V	L	M	I	A	S	M	I	A	G	E	K	L	T	A	L	P	S	L	S	G	F	L	A	V	G	Y	L	A	L	F	G	S	I	I	A
Query Conservation																		.	.	.	.	.
Alig confidence																		.	.	.	.	.
Template Conservation
Template Sequence		L	I	I	G	F	V	C	G	I	I	S	T	L	G	F	V	Y	L	T	P	F	L	E	S	R	L	H	I	Q	D	T	C	G	I	N	N	L	H	G	I	P	G	I	I	G	G	I	V	G	A	V	T	A	A	S	D	W	T	A	R	T	Q	G	K	F	Q	I	Y	G	L	L	V	T	L	A	M	A	L	M	G
Template Known Secondary structure																																T	T						T
Template Predicted Secondary structure
Template SS confidence
		307	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.
		227	.	.	230	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		I	N	A	Y	M	Y	L	I	R	N	V
Query Conservation
Alig confidence
Template Conservation
Template Sequence		G	I	I	V	G	L	I	L	R	L	P
Template Known Secondary structure										T	S	T
Template Predicted Secondary structure
Template SS confidence
		409	410	.	.	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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