Job Description P0AA70 Confidence 6.32% Date Thu Jan 5 11:12:04 GMT 2012 Rank 19 Aligned Residues 224 % Identity 12% Template c3giaA_ PDB info PDB header:transport protein Chain: A: PDB Molecule:uncharacterized protein mj0609; PDBTitle: crystal structure of apct transporter Resolution 2.32 Å

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		59	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		G	H	K	L	P	P	L	R	P	L	L	N	A	A	L	I	G	L	L	L	L	A	V	G	N	G	M	V	T	V	A	E	H	Q	N	V	P	S	G	I	A	A	V	V	V	A	T	V	P	L	F	T	L	C	F	S	R	L	F	G	I	K	T	R	K	L	E	W	V	G	I	A	I	G	L	A	G	I	I	M
Query Conservation
Alig confidence																																									.	.
Template Conservation																																									.	.
Template Sequence		E	H	I	E	N	P	K	K	N	V	P	R	A	I	F	I	S	I	L	I	V	M	F	V	Y	V	G	V	A	I	S	A	I	G	N	L	P	I	D	.	.	E	L	I	K	A	S	E	N	A	L	A	V	A	A	K	P	F	L	G	N	L	G	F	L	L	I	S	I	G	A	L	F	S	I	S	S	A	M	N
Template Known Secondary structure		G	G	B	S	S																													T	T	S				.	.					T	G	G	G
Template Predicted Secondary structure																																									.	.
Template SS confidence
		212	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250			.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.
		139	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	N	S	G	G	N	L	S	G	N	P	W	G	A	I	L	I	L	I	G	S	I	S	W	A	F	G	S	V	Y	G	S	R	I	T	L	P	V	G	M	M	A	G	A	I	E	M	L	A	A	G	V	V	L	M	I	A	S	M	I	A	G	E	K	L	T	A	L	P	S	L	S	G	F	L	A	V	G	Y	L
Query Conservation
Alig confidence											.	.	.	.	.	.	.	.	.	.	.																																								.	.	.	.	.	.	.	.
Template Conservation											.	.	.	.	.	.	.	.	.	.	.																																								.	.	.	.	.	.	.	.
Template Sequence		A	T	I	Y	G	G	A	N	V	.	.	.	.	.	.	.	.	.	.	.	A	Y	S	L	A	K	D	G	E	L	P	E	F	F	E	R	K	V	W	F	K	S	T	E	G	L	Y	I	T	S	A	L	G	V	L	F	A	L	L	.	.	.	.	.	.	.	.	F	N	M	E	G	V	A	S	I	T	S	A	V
Template Known Secondary structure					T	T	T				.	.	.	.	.	.	.	.	.	.	.								S	S			S	S			T	T	S			S		T																	.	.	.	.	.	.	.	.	S
Template Predicted Secondary structure											.	.	.	.	.	.	.	.	.	.	.																																								.	.	.	.	.	.	.	.
Template SS confidence
		290	.	.	.	.	.	.	.	.												.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.									.	.	340	.	.	.	.	.	.	.	.	.	350
		219	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	L	F	G	S	I	I	A	I	N	A	Y	M	Y	L	I	R	N	V	S	P	A	L	A	T	S	Y	A	Y	V	N	P	V	V	A	V	L	L	G	T	G	L	G	G	E	T	L	S	K	I	E	W	L	A	L	G	V	I	V	F	A	V	V	L	V	T	L	G	K	Y	L	F	P	A	K	P	V	V	A	P
Query Conservation
Alig confidence
Template Conservation
Template Sequence		F	M	V	I	Y	L	F	V	I	L	S	H	Y	I	L	I	D	E	V	G	G	R	K	E	I	V	I	F	S	F	I	V	V	L	G	V	F	L	L	L	L	Y	Y	Q	W	I	T	N	R	F	V	F	Y	G	I	I	A	T	F	I	G	V	L	I	F	E	I	I	Y	R	K	V	T	K	R	T	F	S	N	N
Template Known Secondary structure																T																																																																G	G
Template Predicted Secondary structure
Template SS confidence
		351	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430
		299	300	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		V	I	Q	D	A
Query Conservation
Alig confidence
Template Conservation
Template Sequence		M	Y	V	K	S
Template Known Secondary structure		G	T	T	T
Template Predicted Secondary structure
Template SS confidence
		431	.	.	.	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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