Job Description P0CF89 Confidence 98.04% Date Thu Jan 5 11:31:47 GMT 2012 Rank 24 Aligned Residues 96 % Identity 23% Template c2k27A_ PDB info PDB header:transcription regulator Chain: A: PDB Molecule:paired box protein pax-8; PDBTitle: solution structure of human pax8 paired box domain Resolution UNK

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		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.				.	.	.	.	.	50	.	.	.	.	.	.	.	.		.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.
Predicted Secondary structure																																														.	.	.															.																	.	.
Query SS confidence																																														.	.	.															.																	.	.
Query Sequence		M	R	R	T	F	T	A	E	E	K	A	S	V	F	E	L	W	K	N	G	T	G	F	S	E	I	A	N	I	L	G	S	K	P	G	T	I	F	T	M	L	R	D	T	.	.	.	G	G	I	K	P	H	E	R	K	R	A	V	A	H	.	L	T	L	S	E	R	E	E	I	R	A	G	L	S	A	K	.	.
Query Conservation																																														.	.	.															.																	.	.
Alig confidence																																														.	.	.															.																	.	.
Template Conservation
Template Sequence		N	G	R	P	L	P	E	V	V	R	Q	R	I	V	D	L	A	H	Q	G	V	R	P	C	D	I	S	R	Q	L	R	V	S	H	G	C	V	S	K	I	L	G	R	Y	Y	E	T	G	S	I	R	P	G	V	I	G	G	S	K	P	K	V	A	T	P	K	V	V	E	K	I	G	D	Y	K	R	Q	N	P	T
Template Known Secondary structure		S	S		S	S															T											T			S										S	S	T	T	S																	T	T													S	S
Template Predicted Secondary structure
Template SS confidence
		22	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.
		75	.	.	.	.	80	.	.	.	.	.											.	.	.	.	90	.	.	.	.	.	.
Predicted Secondary structure													.	.	.	.	.	.	.	.	.	.
Query SS confidence													.	.	.	.	.	.	.	.	.	.
Query Sequence		M	S	I	R	A	I	A	T	A	L	N	.	.	.	.	.	.	.	.	.	.	R	S	P	S	T	I	S	R	E	V	Q
Query Conservation													.	.	.	.	.	.	.	.	.	.
Alig confidence													.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		M	F	A	W	E	I	R	D	R	L	L	A	E	G	V	C	D	N	D	T	V	P	S	V	S	S	I	N	R	I	I	R
Template Known Secondary structure		S													T		S		T	T	T	S
Template Predicted Secondary structure
Template SS confidence
		102	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions