Job Description P0CF89 Confidence 99.88% Date Thu Jan 5 11:31:47 GMT 2012 Rank 10 Aligned Residues 149 % Identity 21% Template c1c0mA_ PDB info PDB header:transferase Chain: A: PDB Molecule:protein (integrase); PDBTitle: crystal structure of rsv two-domain integrase Resolution 2.53 Å

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		231	.	.	.	.	.	.	.	.	240				.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300			.	.	.	.	.
Predicted Secondary structure												.	.	.																																																													.	.
Query SS confidence												.	.	.																																																													.	.
Query Sequence		L	G	H	W	E	G	D	L	V	S	.	.	.	G	T	K	N	S	H	I	A	T	L	V	D	R	K	S	R	Y	T	I	I	L	R	L	R	G	K	D	S	V	S	V	N	Q	A	L	T	D	K	F	L	S	L	P	S	E	L	R	K	S	L	T	W	D	R	G	M	E	L	A	R	.	.	H	L	E	F	T
Query Conservation												.	.	.																																																													.	.
Alig confidence												.	.	.																																											.	.																	.	.
Template Conservation																																																									.	.
Template Sequence		L	Q	I	W	Q	T	D	F	T	L	E	P	R	M	A	P	R	S	W	L	A	V	T	V	D	T	A	S	S	A	I	V	V	T	Q	H	G	R	V	T	S	V	A	V	Q	H	H	W	A	T	A	I	A	V	L	.	.	G	R	P	K	A	I	K	T	D	N	G	S	C	F	T	S	K	S	T	R	E	W	L
Template Known Secondary structure		T	S										G	G	G		S	S									T	T	T									S	S																		.	.				S						S						S
Template Predicted Secondary structure																																																									.	.
Template SS confidence
		58	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.			.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.
		306	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.									.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.
Predicted Secondary structure																																										.	.	.	.	.	.	.	.
Query SS confidence																																										.	.	.	.	.	.	.	.
Query Sequence		V	S	T	G	V	K	V	Y	F	C	D	P	Q	S	P	W	Q	R	G	T	N	E	N	T	N	G	L	I	R	Q	Y	F	P	K	K	T	C	L	A	Q	.	.	.	.	.	.	.	.	Y	T	Q	H	E	L	D	L	V	A	A	Q	L	N	N	R	P	R	K	T	L	K	F	K	T	P	K	E	I	I	E	R
Query Conservation																																										.	.	.	.	.	.	.	.
Alig confidence																																										.	.	.	.	.	.	.	.																							.
Template Conservation																																																																								.
Template Sequence		A	R	W	G	I	A	H	T	T	G	I	P	G	N	S	Q	G	Q	A	M	V	E	R	A	N	R	L	L	K	D	R	I	R	V	L	A	E	G	D	G	F	M	K	R	I	P	T	S	K	Q	G	E	L	L	A	K	A	M	Y	A	L	N	H	K	E	R	G	E	N	T	.	K	T	P	I	Q	K	H	W	R
Template Known Secondary structure					T								S	S	S	S	T	T	S																					T	T		S	S	S			G	G	G														S	S			S	S		S	.	S								S
Template Predicted Secondary structure																																																																								.
Template SS confidence
		136	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.		.	.	.	.	210	.	.	.	.
		378	.	380	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		G	V	A	L	T
Query Conservation
Alig confidence
Template Conservation
Template Sequence		P	T	V	L	T
Template Known Secondary structure						S
Template Predicted Secondary structure
Template SS confidence
		215	.	.	.	.

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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