Job Description P0ACJ8 Confidence 77.44% Date Thu Jan 5 11:18:19 GMT 2012 Rank 286 Aligned Residues 58 % Identity 24% Template d1smyf2 SCOP info DNA/RNA-binding 3-helical bundle Sigma3 and sigma4 domains of RNA polymerase sigma factors Sigma4 domain Resolution 2.70

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		121	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.					.	.	.	.	.	190	.	.	.
Predicted Secondary structure																																																																		.	.	.	.
Query SS confidence																																																																		.	.	.	.
Query Sequence		M	A	R	R	L	Q	V	T	S	E	K	V	G	N	L	A	F	L	D	V	T	G	R	I	A	Q	T	L	L	N	L	A	K	Q	P	D	A	M	T	H	P	D	G	M	Q	I	K	I	T	R	Q	E	I	G	Q	I	V	G	C	S	R	E	T	V	.	.	.	.	G	R	I	L	K	M	L	E	D
Query Conservation																																																																		.	.	.	.
Alig confidence																																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																			.	.	.	.
Template Conservation																																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		A	A	T	Q	S	L	L	S	E	E	L	E	K	A	L	S	K	L	S	E	R	E	A	M	V	L	K	L	R	K	G	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	L	I	D	G	E	E	V	G	A	F	F	G	V	T	R	E	R	I	R	Q	I	E	N	K	A	L	R	K	L	K	Y
Template Known Secondary structure																	T	T	S														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	T	T					T	T	T	S	S	S	S
Template Predicted Secondary structure																																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		344	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.																.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions