Job Description P0ACJ8 Confidence 99.71% Date Thu Jan 5 11:18:19 GMT 2012 Rank 22 Aligned Residues 134 % Identity 19% Template c3gydA_ PDB info PDB header:dna binding protein Chain: A: PDB Molecule:cyclic nucleotide-binding domain; PDBTitle: crystal structure of a cyclic nucleotide-binding domain (mfla_1926)2 from methylobacillus flagellatus kt at 1.79 a resolution Resolution 1.79 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		3	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	G	K	P	Q	T	D	P	T	L	E	W	F	L	S	H	C	H	I	H	K	Y	P	S	K	S	T	L	I	H	Q	G	E	K	A	E	T	L	Y	Y	I	V	K	G	S	V	A	V	L	I	K	D	E	E	G	K	E	M	I	L	S	Y	L	N	Q	G	D	F	I	G	E	L	G	L	F	E	E	G	Q	E
Query Conservation
Alig confidence																																																																													.
Template Conservation																																																																													.
Template Sequence		L	F	G	D	F	S	N	E	E	V	R	Y	L	C	S	Y	X	Q	C	Y	A	A	P	R	D	C	Q	L	L	T	E	G	D	P	G	D	Y	L	L	L	I	L	T	G	E	V	N	V	I	K	D	I	P	N	K	G	I	Q	T	I	A	K	V	G	A	G	A	I	I	G	E	X	S	X	I	.	D	G	X	P
Template Known Secondary structure		S	S													T	T								T	T						T	T	S																				T	T	T										T	T				S						.
Template Predicted Secondary structure																																																																													.
Template SS confidence
		27	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.		.	.	.	.
		83	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		R	S	A	W	V	R	A	K	T	A	C	E	V	A	E	I	S	Y	K	K	F	R	Q	L	I	Q	V	N	P	D	I	L	M	R	L	S	A	Q	M	A	R	R	L	Q	V	T	S	E	K	V	G	N	L	A	F
Query Conservation
Alig confidence
Template Conservation
Template Sequence		R	S	A	S	C	V	A	S	L	P	T	D	F	A	V	L	S	R	D	A	L	Y	Q	L	L	A	N	X	P	K	L	G	N	K	V	L	I	R	L	L	Q	L	L	T	A	R	F	R	E	S	Y	D	R	I	L
Template Known Secondary structure			S	S																																																				G
Template Predicted Secondary structure
Template SS confidence
		106	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160

No model constructed - rank, confidence too low

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions