Job Description P0ACJ8 Confidence 99.92% Date Thu Jan 5 11:18:19 GMT 2012 Rank 17 Aligned Residues 197 % Identity 15% Template c2fmyB_ PDB info PDB header:dna binding protein Chain: B: PDB Molecule:carbon monoxide oxidation system transcription regulator PDBTitle: co-dependent transcription factor cooa from carboxydothermus2 hydrogenoformans (imidazole-bound form) Resolution 2.20 Å

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		3	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	G	K	P	Q	T	D	P	T	L	E	W	F	L	S	H	C	H	I	H	K	Y	P	S	K	S	T	L	I	H	Q	G	E	K	A	E	T	L	Y	Y	I	V	K	G	S	V	A	V	L	I	K	D	E	E	G	K	E	M	I	L	S	Y	L	N	Q	G	D	F	I	G	E	L	G	L	F	E	E	G	Q	E
Query Conservation
Alig confidence																																																																								.	.	.	.	.	.	.	.	.
Template Conservation																																																																								.	.	.	.	.	.	.	.	.
Template Sequence		L	L	E	V	L	N	S	E	E	Y	S	G	V	L	K	E	F	R	E	Q	R	Y	S	K	K	A	I	L	Y	T	P	N	T	E	R	N	L	V	F	L	V	K	S	G	R	V	R	V	Y	L	A	Y	E	D	K	E	F	T	L	A	I	L	E	A	G	D	I	F	C	T	.	.	.	.	.	.	.	.	.	H
Template Known Secondary structure							T	S	G	G	G	T	T	T	G	G	G								T	T						S	S		S	S									S									S	S										T	T					S	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																																																																								.	.	.	.	.	.	.	.	.
Template SS confidence
		1012	.	.	.	.	.	.	.	1020	.	.	.	.	.	.	.	.	.	1030	.	.	.	.	.	.	.	.	.	1040	.	.	.	.	.	.	.	.	.	1050	.	.	.	.	.	.	.	.	.	1060	.	.	.	.	.	.	.	.	.	1070	.	.	.	.	.	.	.	.	.	1080	.										.
		83	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		R	S	A	W	V	R	A	K	T	A	C	E	V	A	E	I	S	Y	K	K	F	R	Q	L	I	Q	V	N	P	D	I	L	M	R	L	S	A	Q	M	A	R	R	L	Q	V	T	S	E	K	V	G	N	L	A	F	L	D	V	T	G	R	I	A	Q	T	L	L	N	L	A	K	Q	P	D	A	M	T	H	P	D
Query Conservation
Alig confidence
Template Conservation
Template Sequence		T	R	A	F	I	Q	A	M	E	D	T	T	I	L	Y	T	D	I	R	N	F	Q	N	I	V	V	E	F	P	A	F	S	L	N	M	V	K	V	L	G	D	L	L	K	N	S	L	T	I	I	N	G	L	V	F	K	D	A	R	L	R	L	A	E	F	L	V	Q	A	A	M	D	T	G	L	K	V	P	Q	G
Template Known Secondary structure		S	S						S	S	S																			T																										T																							T	T
Template Predicted Secondary structure
Template SS confidence
		1083	.	.	.	.	.	.	1090	.	.	.	.	.	.	.	.	.	1100	.	.	.	.	.	.	.	.	.	1110	.	.	.	.	.	.	.	.	.	1120	.	.	.	.	.	.	.	.	.	1130	.	.	.	.	.	.	.	.	.	1140	.	.	.	.	.	.	.	.	.	1150	.	.	.	.	.	.	.	.	.	1160	.	.
		163	.		.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.		.	200	.	.	.	.	.	.	.	.
Predicted Secondary structure				.																																			.
Query SS confidence				.																																			.
Query Sequence		G	M	.	Q	I	K	I	T	R	Q	E	I	G	Q	I	V	G	C	S	R	E	T	V	G	R	I	L	K	M	L	E	D	Q	N	L	I	S	.	A	H	G	K	T	I	V	V	Y	G
Query Conservation				.																																			.
Alig confidence				.																																			.
Template Conservation
Template Sequence		I	K	L	E	L	G	L	N	T	E	E	I	A	L	M	L	G	T	T	R	Q	T	V	S	V	L	L	N	D	F	K	K	M	G	I	L	E	R	V	N	Q	R	T	L	L	L	K	D
Template Known Secondary structure							S											T	S															T	T	S						T	T					S
Template Predicted Secondary structure
Template SS confidence
		1163	.	.	.	.	.	.	1170	.	.	.	.	.	.	.	.	.	1180	.	.	.	.	.	.	.	.	.	1190	.	.	.	.	.	.	.	.	.	1200	.	.	.	.	.	.	.	.	.	1210

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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