Job Description P06615 Confidence 11.20% Date Thu Jan 5 10:59:13 GMT 2012 Rank 36 Aligned Residues 107 % Identity 16% Template d1k4ta2 SCOP info DNA breaking-rejoining enzymes DNA breaking-rejoining enzymes Eukaryotic DNA topoisomerase I, catalytic core Resolution 2.10

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		70	.	.	.	.	.	.	.	.	.	80	.	.	.							.	.							.	.	.	.	90	.	.	.	.	.	.							.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.
Predicted Secondary structure																.	.	.	.	.	.			.	.	.	.	.	.												.	.	.	.	.	.
Query SS confidence																.	.	.	.	.	.			.	.	.	.	.	.												.	.	.	.	.	.
Query Sequence		K	M	L	L	A	T	L	W	N	T	G	A	R	I	.	.	.	.	.	.	N	E	.	.	.	.	.	.	A	L	A	L	T	R	G	D	F	S	L	.	.	.	.	.	.	A	P	P	Y	P	F	V	Q	L	A	T	L	K	Q	R	T	E	K	A	A	R	T	A	G	R	M	P	A	G	Q	Q	T	H	R	L
Query Conservation																.	.	.	.	.	.			.	.	.	.	.	.												.	.	.	.	.	.
Alig confidence																.	.	.	.	.	.			.	.	.	.	.	.												.	.	.	.	.	.															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																																													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		A	V	A	L	Y	F	I	D	K	L	A	L	R	A	G	N	E	K	E	E	G	E	T	A	D	T	V	G	C	C	S	L	R	V	E	H	I	N	L	H	P	E	L	D	G	Q	E	Y	V	V	E	F	D	F	L	G	K	D	S	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	I	R	Y	Y	N
Template Known Secondary structure											S										T	T	T	S						G	G	G		B	G	G	G								T	T												G	G	G	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																																																													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		476	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.																	.	.	.	.	.
		132	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.
Predicted Secondary structure
Query SS confidence
Query Sequence		V	P	L	S	D	S	W	Y	V	S	Q	L	Q	T	M	V	A	Q	L	K	I	P	M	E	R	R	N	R	R	T	G	R	T	E	K	A	R	I	W	E	V	T	D	R	T	V	R	T	W	I	G	E	A	V	A	A	A	A	A	D	G	V	T	F	S	V	P	V	T	P	H	T	F	R	H	S	Y	A	M	H
Query Conservation
Alig confidence																														.	.	.	.	.	.	.	.	.	.	.	.															.	.	.	.	.	.	.	.	.	.	.
Template Conservation																														.	.	.	.	.	.	.	.	.	.	.	.															.	.	.	.	.	.	.	.	.	.	.
Template Sequence		K	V	P	V	E	K	R	V	F	K	N	L	Q	L	F	M	E	N	K	Q	P	E	D	D	L	F	D	R	.	.	.	.	.	.	.	.	.	.	.	.	L	N	T	G	I	L	N	K	H	L	Q	D	L	M	.	.	.	.	.	.	.	.	.	.	.	E	G	L	T	A	K	V	F	R	T	Y	N	A	S	I
Template Known Secondary structure																	T	T	T			T	T	S	B	S	S	T	T	.	.	.	.	.	.	.	.	.	.	.	.														S	.	.	.	.	.	.	.	.	.	.	.	T	T			T	T
Template Predicted Secondary structure																														.	.	.	.	.	.	.	.	.	.	.	.															.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		540	.	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.	.	.	.	560	.	.	.	.	.	.	.													.	.	570	.	.	.	.	.	.	.	.	.	580	.												.	.	.	.	.	.	.	.	590	.	.	.	.	.	.
		212	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		M	L	Y	A
Query Conservation
Alig confidence
Template Conservation
Template Sequence		T	L	Q	Q
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		597	.	.	600

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions