Job Description P06615 Confidence 11.23% Date Thu Jan 5 10:59:13 GMT 2012 Rank 35 Aligned Residues 140 % Identity 13% Template d1a41a_ SCOP info DNA breaking-rejoining enzymes DNA breaking-rejoining enzymes Eukaryotic DNA topoisomerase I, catalytic core Resolution 2.30

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		64	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.				.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.		.	.	.	.	.
Predicted Secondary structure																							.	.	.																																																			.
Query SS confidence																							.	.	.																																																			.
Query Sequence		V	P	D	L	H	R	K	M	L	L	A	T	L	W	N	T	G	A	R	I	N	.	.	.	E	A	L	A	L	T	R	G	D	F	S	L	A	P	P	Y	P	F	V	Q	L	A	T	L	K	Q	R	T	E	K	A	A	R	T	A	G	R	M	P	A	G	Q	Q	T	H	R	L	V	P	L	.	S	D	S	W	Y
Query Conservation																							.	.	.																																																			.
Alig confidence																							.	.	.																										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.									.
Template Conservation																																																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		T	D	S	N	Y	Q	L	A	V	F	M	L	M	E	T	M	F	F	K	E	N	E	T	V	G	L	L	T	L	K	N	K	H	I	E	I	S	P	D	E	I	V	I	K	F	V	G	K	D	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	K	V	S	H	E	F	V	V	H	K	S	N	R	L
Template Known Secondary structure		T		T	T																								T		B	G	G	G					T	T									T	T	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	T									T	T	S	S	S
Template Predicted Secondary structure																																																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		111	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.																		160	.	.	.	.	.	.	.	.	.	170	.	.	.
		140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.
Predicted Secondary structure																																																																																	.
Query SS confidence																																																																																	.
Query Sequence		V	S	Q	L	Q	T	M	V	A	Q	L	K	I	P	M	E	R	R	N	R	R	T	G	R	T	E	K	A	R	I	W	E	V	T	D	R	T	V	R	T	W	I	G	E	A	V	A	A	A	A	A	D	G	V	T	F	S	V	P	V	T	P	H	T	F	R	H	S	Y	A	M	H	M	L	Y	A	G	I	P	.
Query Conservation																																																																																	.
Alig confidence																				.	.	.	.	.	.	.	.	.	.	.	.														.	.	.	.	.	.	.	.	.	.	.	.	.																								.
Template Conservation																				.	.	.	.	.	.	.	.	.	.	.	.														.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		Y	K	P	L	L	K	L	T	D	D	S	S	P	E	E	F	L	F	.	.	.	.	.	.	.	.	.	.	.	.	N	K	L	S	E	R	K	V	Y	E	C	I	K	.	.	.	.	.	.	.	.	.	.	.	.	.	Q	F	G	I	R	I	K	D	L	R	T	Y	G	V	N	Y	T	F	L	Y	N	F	W	T
Template Known Secondary structure											T	T		T	T	S	B	S	S	.	.	.	.	.	.	.	.	.	.	.	.	T	T												.	.	.	.	.	.	.	.	.	.	.	.	.		T	T
Template Predicted Secondary structure																				.	.	.	.	.	.	.	.	.	.	.	.														.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		183	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200													.	.	.	.	.	.	.	.	.	210	.	.	.														.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.
																				219	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.
Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	L	K	V	L	Q	S	L	M	G	H	K	S	I	S	S	T	E	V	Y	T	K	V	F	A	L	D	V
Query Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		N	V	K	S	I	S	P	L	P	S	P	K	K	L	I	A	L	T	I	K	Q	T	A	E	V	V	G	H	T	P	S	I	S	K	R	A	Y	M	A	T	T	I	L	E	M
Template Known Secondary structure						S	S	S																				S	S
Template Predicted Secondary structure
Template SS confidence
		238	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions