Job Description P06615 Confidence 99.97% Date Thu Jan 5 10:59:13 GMT 2012 Rank 1 Aligned Residues 197 % Identity 17% Template c3nkhB_ PDB info PDB header:recombination Chain: B: PDB Molecule:integrase; PDBTitle: crystal structure of integrase from mrsa strain staphylococcus aureus Resolution 2.50 Å

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		50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.															.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.
Predicted Secondary structure																			.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																			.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		K	Y	L	L	A	P	E	V	S	A	L	L	H	Y	V	P	D	.	.	.	.	.	.	.	.	.	.	.	.	.	.	L	H	R	K	M	L	L	A	T	L	W	N	T	G	A	R	I	N	E	A	L	A	L	T	R	G	D	F	S	L	A	P	P	Y	P	F	V	Q	L	A	T	L	K	Q	R	T	E	K	A
Query Conservation																			.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																			.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		A	Y	L	E	L	N	E	I	E	S	I	I	K	D	I	N	T	K	A	Q	K	X	H	S	G	I	H	K	R	F	Y	L	F	V	A	L	X	T	E	F	Q	A	L	N	G	X	R	I	G	E	X	L	A	I	Q	N	E	D	I	D	F	D	N	K	S	L	N	I	N	G	T	I	H	W	F	H	D	E	S	G
Template Known Secondary structure		T	S																			T		S																														T		B	G	G	G			T	T	T	T														T	T	S
Template Predicted Secondary structure
Template SS confidence
		0	.	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.
		116	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.			.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.
Predicted Secondary structure																								.	.
Query SS confidence																								.	.
Query Sequence		A	R	T	A	G	R	M	P	A	G	Q	Q	T	H	R	L	V	P	L	S	D	S	.	.	W	Y	V	S	Q	L	Q	T	M	V	A	Q	L	K	I	P	M	E	R	R	N	R	R	T	G	R	T	E	K	A	R	I	W	E	V	T	D	R	T	V	R	T	W	I	G	E	A	V	A	A	A	A	A	D	G	V
Query Conservation																								.	.
Alig confidence																								.	.																																																							.	.
Template Conservation																																																																																.	.
Template Sequence		G	F	G	V	K	D	T	T	K	T	E	S	S	Y	R	T	I	G	L	S	S	R	S	C	E	I	L	K	K	A	I	L	E	N	K	K	D	S	K	W	N	D	G	Y	L	N	R	N	F	V	F	T	N	H	K	G	N	P	X	Q	T	E	R	F	N	K	I	L	R	E	A	A	K	D	V	G	I	D	.	.
Template Known Secondary structure										S	S	S																															T	T					S	B	S	S	B		T	T	S	S	B																	T	T			.	.
Template Predicted Secondary structure																																																																																.	.
Template SS confidence
		80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.
		194	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.		.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.
Predicted Secondary structure																																											.
Query SS confidence																																											.
Query Sequence		T	F	S	V	P	V	T	P	H	T	F	R	H	S	Y	A	M	H	M	L	Y	A	G	I	P	L	K	V	L	Q	S	L	M	G	H	K	S	I	S	S	T	.	E	V	Y	T	K	V	F	A	L	D	V	A	A	R	H	R	V
Query Conservation																																											.
Alig confidence		.	.	.																																							.
Template Conservation		.	.	.
Template Sequence		.	.	.	K	E	V	S	S	H	I	L	R	H	S	H	I	S	L	L	S	Q	Q	G	V	S	L	K	A	I	X	D	R	V	G	H	S	D	H	R	T	T	L	S	I	Y	S	H	V	T	E	Q	X	D	K	D	X	X	N	K
Template Known Secondary structure		.	.	.	S			S															T	T												S	T	T																		T
Template Predicted Secondary structure		.	.	.
Template SS confidence
					158	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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