Job Description P06615 Confidence 87.84% Date Thu Jan 5 10:59:13 GMT 2012 Rank 16 Aligned Residues 156 % Identity 13% Template c2h7fX_ PDB info PDB header:isomerase/dna Chain: X: PDB Molecule:dna topoisomerase 1; PDBTitle: structure of variola topoisomerase covalently bound to dna Resolution 2.70 Å

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		70	.	.	.	.	.	.	.	.	.	80	.	.	.	.		.											.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.		.	.	.
Predicted Secondary structure																	.		.	.	.	.	.	.	.	.	.	.																																																		.
Query SS confidence																	.		.	.	.	.	.	.	.	.	.	.																																																		.
Query Sequence		K	M	L	L	A	T	L	W	N	T	G	A	R	I	N	.	E	.	.	.	.	.	.	.	.	.	.	A	L	A	L	T	R	G	D	F	S	L	A	P	P	Y	P	F	V	Q	L	A	T	L	K	Q	R	T	E	K	A	A	R	T	A	G	R	M	P	A	G	Q	Q	T	H	R	L	V	P	L	.	S	D	S
Query Conservation																	.		.	.	.	.	.	.	.	.	.	.																																																		.
Alig confidence																	.		.	.	.	.	.	.	.	.	.	.																									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.									.
Template Conservation																																																					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		A	V	F	M	L	M	E	T	M	F	F	I	R	F	G	K	M	K	Y	L	K	E	N	E	T	V	G	L	L	T	L	K	N	K	H	I	E	I	S	P	D	K	I	V	I	K	F	V	G	K	D	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	K	V	S	H	E	F	V	V	H	K	S	N
Template Known Secondary structure																													S	T	T		B	G	G	G					S	S									G	G	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	G									T	T	S
Template Predicted Secondary structure																																																					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		118	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.																		.	170	.	.	.	.	.	.	.	.	.	180
		138	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		W	Y	V	S	Q	L	Q	T	M	V	A	Q	L	K	I	P	M	E	R	R	N	R	R	T	G	R	T	E	K	A	R	I	W	E	V	T	D	R	T	V	R	T	W	I	G	E	A	V	A	A	A	A	A	D	G	V	T	F	S	V	P	V	T	P	H	T	F	R	H	S	Y	A	M	H	M	L	Y	A	G	I
Query Conservation
Alig confidence																								.	.	.	.	.	.	.	.	.	.	.	.														.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																								.	.	.	.	.	.	.	.	.	.	.	.														.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		R	L	Y	K	P	L	L	K	L	T	D	D	S	S	P	E	E	F	L	F	N	K	.	.	.	.	.	.	.	.	.	.	.	.	L	S	E	R	K	V	Y	E	S	I	K	Q	F	.	.	.	.	.	.	.	.	.	.	.	.	.	G	I	R	I	K	D	L	R	T	Y	G	V	N	Y	T	F	L	Y	N	F
Template Known Secondary structure		T	T										T	T		T	T	S	B	T	T	T	T	.	.	.	.	.	.	.	.	.	.	.	.											G	G	G	.	.	.	.	.	.	.	.	.	.	.	.	.	T
Template Predicted Secondary structure																								.	.	.	.	.	.	.	.	.	.	.	.														.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		181	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.													.	.	.	.	.	.	.	210	.	.	.	.	.														.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.
																					218	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.			.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.
Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																												.	.
Query SS confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																												.	.
Query Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	P	L	K	V	L	Q	S	L	M	G	H	K	S	I	S	S	T	E	V	Y	T	K	V	F	A	L	D	.	.	V	A	A	R	H	R	V	Q	F	A	M	P	E	S	D	A	V	A	M	L	K	Q	L
Query Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																												.	.
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																												.	.
Template Conservation
Template Sequence		W	T	N	V	K	S	I	S	P	L	P	S	P	K	K	L	I	A	L	T	I	K	Q	T	A	E	V	V	G	H	T	P	S	I	S	K	R	A	M	A	T	T	I	L	E	M	V	K	D	K	N	F	L	D	V	V	S	K	T	T	F	D	E	F	L	S	I	V	V	D	H
Template Known Secondary structure								S	S	S																				T	S																	T	T		T	T							T	S
Template Predicted Secondary structure
Template SS confidence
		236	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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