Job Description P06615 Confidence 95.35% Date Thu Jan 5 10:59:13 GMT 2012 Rank 14 Aligned Residues 164 % Identity 13% Template c2f4qA_ PDB info PDB header:isomerase Chain: A: PDB Molecule:type i topoisomerase, putative; PDBTitle: crystal structure of deinococcus radiodurans topoisomerase ib Resolution 1.75 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		70	.	.	.	.	.	.	.	.	.	80	.	.	.	.		.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.
Predicted Secondary structure																	.
Query SS confidence																	.
Query Sequence		K	M	L	L	A	T	L	W	N	T	G	A	R	I	N	.	E	A	L	A	L	T	R	G	D	F	S	L	A	P	P	Y	P	F	V	Q	L	A	T	L	K	Q	R	T	E	K	A	A	R	T	A	G	R	M	P	A	G	Q	Q	T	H	R	L	V	P	L	S	D	S	W	Y	V	S	Q	L	Q	T	M	V	A
Query Conservation																	.
Alig confidence																	.																										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																						.
Template Conservation																																											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																						.
Template Sequence		A	L	X	T	R	L	L	H	V	A	R	F	R	V	T	Y	G	L	S	T	L	R	Q	R	H	V	V	V	D	G	N	T	V	T	F	R	F	K	G	K	H	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	G	V	S	Q	H	K	A	T	S	D	R	T	L	A	A	N	X	Q	K	L	L	.
Template Known Secondary structure																			G	G	G		B	G	G	G					T	T									G	G	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	G																					.
Template Predicted Secondary structure																																											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																						.
Template SS confidence
		125	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.																		.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.
		149	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170				.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.
Predicted Secondary structure																								.	.	.																																																	.	.	.	.	.	.	.
Query SS confidence																								.	.	.																																																	.	.	.	.	.	.	.
Query Sequence		Q	L	K	I	P	M	E	R	R	N	R	R	T	G	R	T	E	K	A	R	I	W	.	.	.	E	V	T	D	R	T	V	R	T	W	I	G	E	A	V	A	A	A	A	A	D	G	V	T	F	S	V	P	V	T	P	H	T	F	R	H	S	Y	A	M	H	M	L	Y	A	G	I	P	.	.	.	.	.	.	.
Query Conservation																								.	.	.																																																	.	.	.	.	.	.	.
Alig confidence		.	.	.	.	.	.																	.	.	.																.	.	.	.	.	.	.	.	.	.	.																							.	.	.	.	.	.	.
Template Conservation		.	.	.	.	.	.																																			.	.	.	.	.	.	.	.	.	.	.
Template Sequence		.	.	.	.	.	.	D	L	P	G	P	W	L	F	Q	T	V	D	A	G	G	G	E	R	R	R	I	H	S	T	E	L	N	A	Y	L	R	E	V	I	.	.	.	.	.	.	.	.	.	.	.	G	P	F	T	A	K	D	F	R	T	W	G	G	T	L	L	A	A	E	Y	L	A	Q	Q	G	T	E	S	S
Template Known Secondary structure		.	.	.	.	.	.	T	S		S	S	B	S	S					S	S	S	S																			.	.	.	.	.	.	.	.	.	.	.	T	T	S																									S	S
Template Predicted Secondary structure		.	.	.	.	.	.																																			.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
								197	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230												.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.
													219	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.			.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.
Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.																												.	.
Query SS confidence		.	.	.	.	.	.	.	.	.	.	.																												.	.
Query Sequence		.	.	.	.	.	.	.	.	.	.	.	L	K	V	L	Q	S	L	M	G	H	K	S	I	S	S	T	E	V	Y	T	K	V	F	A	L	D	V	.	.	A	A	R	H	R	V	Q	F	A	M	P	E	S	D	A	V	A	M	L	K	Q	L	S
Query Conservation		.	.	.	.	.	.	.	.	.	.	.																												.	.
Alig confidence		.	.	.	.	.	.	.	.	.	.	.																												.	.
Template Conservation
Template Sequence		E	R	Q	A	K	K	V	L	V	D	C	V	K	F	V	A	D	D	L	G	N	T	P	A	V	T	R	G	S	Y	I	C	P	V	I	F	D	R	Y	L	D	G	K	V	L	D	D	Y	E	P	R	T	E	R	Q	E	A	E	L	E	G	L	T
Template Known Secondary structure																					T										T	S		T								T	T			G	G	G	G	S			S						T	T	T	T	S
Template Predicted Secondary structure
Template SS confidence
		260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions