Job Description P06615 Confidence 99.87% Date Thu Jan 5 10:59:13 GMT 2012 Rank 11 Aligned Residues 233 % Identity 15% Template c2a3vA_ PDB info PDB header:recombination Chain: A: PDB Molecule:site-specific recombinase inti4; PDBTitle: structural basis for broad dna-specificity in integron2 recombination Resolution 2.80 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		2	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.
Predicted Secondary structure
Query SS confidence
Query Sequence		S	G	S	V	I	H	S	Q	S	A	V	M	V	P	A	V	Y	S	A	G	Q	P	A	S	L	P	V	A	I	D	Y	P	A	A	L	A	L	R	Q	M	S	M	V	H	D	E	L	P	K	Y	L	L	A	P	E	V	S	A	L	L	H	Y	V	P	D	L	H	R	K	M	L	L	A	T	L	W	N	T	G	A
Query Conservation
Alig confidence																																																							.	.	.	.	.	.	.	.	.	.
Template Conservation																																																							.	.	.	.	.	.	.	.	.	.
Template Sequence		T	K	T	Q	S	L	A	L	N	S	L	S	F	L	Y	K	E	I	L	K	T	P	L	S	L	E	I	R	F	Q	R	S	Q	L	E	R	K	L	P	V	V	L	T	R	D	E	I	R	R	L	L	E	I	.	.	.	.	.	.	.	.	.	.	V	D	P	K	H	Q	L	P	I	K	L	L	Y	G	S	G	L
Template Known Secondary structure																			T	S	S					T	T																									T	T	S	.	.	.	.	.	.	.	.	.	.	S														S
Template Predicted Secondary structure																																																							.	.	.	.	.	.	.	.	.	.
Template SS confidence
		65	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.											.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.
		82	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.																		.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.
Predicted Secondary structure																																											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		R	I	N	E	A	L	A	L	T	R	G	D	F	S	L	A	P	P	Y	P	F	V	Q	L	A	T	L	K	Q	R	T	E	K	A	A	R	T	A	G	R	M	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	P	A	G	Q	Q	T	H	R	L	V	P	L	S	D	S	W	Y	V	S	Q	L	Q
Query Conservation																																											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																																											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		R	L	M	E	C	M	R	L	R	V	Q	D	I	D	F	D	Y	G	A	I	R	I	W	Q	G	K	G	G	K	N	R	T	V	T	L	A	K	E	L	Y	P	H	L	K	E	Q	I	A	L	A	K	R	Y	Y	D	R	D	L	H	Q	K	N	Y	G	G	V	W	L	P	T	A	L	K	E	K	Y	P	N	A	P
Template Known Secondary structure								T		B	G	G	G			T	T	T	T								T	T	T									G	G	G																			T	S		T	T	B			S			S	T	T		T	T	T	S	T	T	G	G
Template Predicted Secondary structure
Template SS confidence
		135	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.
		145	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		T	M	V	A	Q	L	K	I	P	M	E	R	R	N	R	R	T	G	R	T	E	K	A	R	I	W	E	V	T	D	R	T	V	R	T	W	I	G	E	A	V	A	A	A	A	A	D	G	V	T	F	S	V	P	V	T	P	H	T	F	R	H	S	Y	A	M	H	M	L	Y	A	G	I	P	L	K	V	L	Q	S
Query Conservation
Alig confidence																																																	.	.	.	.	.
Template Conservation																																																	.	.	.	.	.
Template Sequence		Y	E	F	R	W	H	Y	L	F	P	S	F	Q	L	S	L	D	P	E	S	D	V	M	R	R	H	H	M	N	E	T	V	L	Q	K	A	V	R	R	S	A	Q	E	A	G	I	E	.	.	.	.	.	K	T	V	T	C	H	T	L	R	H	S	F	A	T	H	L	L	E	V	G	A	D	I	R	T	V	Q	E
Template Known Secondary structure		G		G	G	G	S	B	S	S	B		S	S					T	T	T	T						B																T	T				.	.	.	.	.	S																		T	T
Template Predicted Secondary structure																																																	.	.	.	.	.
Template SS confidence
		215	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.						.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.
		225	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	M	G	H	K	S	I	S	S	T	E	V	Y	T	K	V	F	A	L	D	V	A	A	R	H
Query Conservation
Alig confidence
Template Conservation
Template Sequence		Q	L	G	H	T	D	V	K	T	T	Q	I	Y	T	H	S	G	V	L	S	P	L	S	R	L
Template Known Secondary structure				T		S	S					G	G	G
Template Predicted Secondary structure
Template SS confidence
		290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions