Job Description P06615 Confidence 69.45% Date Thu Jan 5 10:59:13 GMT 2012 Rank 22 Aligned Residues 161 % Identity 12% Template c1p4eB_ PDB info PDB header:dna binding protein/recombination/dna Chain: B: PDB Molecule:recombinase flp protein; PDBTitle: flpe w330f mutant-dna holliday junction complex Resolution 2.70 Å

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		69	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		R	K	M	L	L	A	T	L	W	N	T	G	A	R	I	N	E	A	L	A	L	T	R	G	D	F	S	L	A	P	P	Y	P	F	V	Q	L	A	T	L	K	Q	R	T	E	K	A	A	R	T	A	G	R	M	P	A	G	Q	Q	T	H	R	L	V	P	L	S	D	S	W	Y	V	S	Q	L	Q	T	M	V	A
Query Conservation
Alig confidence																						.	.	.	.	.	.	.
Template Conservation																						.	.	.	.	.	.	.
Template Sequence		Y	Q	F	L	F	L	A	T	F	I	N	C	G	R	F	S	D	I	K	N	.	.	.	.	.	.	.	V	D	P	K	S	F	K	L	V	Q	N	K	Y	L	G	V	I	I	Q	C	L	V	T	E	T	K	T	S	V	S	R	H	I	Y	F	F	S	A	R	G	R	I	D	P	L	V	Y	L	D	E	F	L	R
Template Known Secondary structure													T								T	.	.	.	.	.	.	.	B		G	G	G							T	T	T										S		T	T	S											S	S	S												T
Template Predicted Secondary structure																						.	.	.	.	.	.	.
Template SS confidence
		178	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.								.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250
		149	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.		.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.
Predicted Secondary structure																				.
Query SS confidence																				.
Query Sequence		Q	L	K	I	P	M	E	R	R	N	R	R	T	G	R	T	E	K	.	A	R	I	W	E	V	T	D	R	T	V	R	T	W	I	G	E	A	V	A	A	A	A	A	D	G	V	T	F	S	V	P	V	T	P	H	T	F	R	H	S	Y	A	M	H	M	L	Y	A	G	I	P	L	K	V	L	Q	S	L	M	G
Query Conservation																				.
Alig confidence																				.																																																				.
Template Conservation																																																																								.
Template Sequence		N	S	E	P	V	L	K	R	V	N	R	T	G	N	S	S	S	N	K	Q	E	Y	Q	L	L	K	D	N	L	V	R	S	Y	N	K	A	L	K	K	N	A	P	Y	P	I	F	A	I	K	N	G	P	K	S	H	I	G	R	H	L	M	T	S	F	L	S	M	K	G	L	.	T	E	L	T	N	V	V	G	N
Template Known Secondary structure		T										B	S					S	S			S			S	S		T	T												T		S	S	G	G	G	G	S	T	T			S	T	T													T	T		.									T
Template Predicted Secondary structure																																																																								.
Template SS confidence
		251	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320		.	.	.	.	.	.	.	.	.
		228	.	230	.	.	.	.	.	.	.	.	.	240	.
Predicted Secondary structure
Query SS confidence
Query Sequence		H	K	S	I	S	S	T	E	V	Y	T	K	V	F
Query Conservation
Alig confidence					.	.	.	.
Template Conservation					.	.	.	.
Template Sequence		F	S	D	.	.	.	.	T	T	Y	T	H	Q	I
Template Known Secondary structure					.	.	.	.			S
Template Predicted Secondary structure					.	.	.	.
Template SS confidence
		330	.	.					.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions