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Job DescriptionP06615
Confidence99.90%DateThu Jan 5 10:59:13 GMT 2012
Rank8Aligned Residues227
% Identity11%Templatec1ma7A_
PDB info PDB header:hydrolase, ligase/dnaChain: A: PDB Molecule:cre recombinase; PDBTitle: crystal structure of cre site-specific recombinase2 complexed with a mutant dna substrate, loxp-a8/t27
Resolution2.30 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   4.....10.........20.........30.........40.........50.........60..... ....70.......
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Query Sequence  SVIHSQSAVMVPAVYSAGQPASLPVAIDYPAALALRQMSMVHDELPKYLLAPEVSALLHYVP. . . . . . DLHRKMLLATLW
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Template Sequence  QHLGQLNMLHRRSGLPRPSDSNAVSLVMRRIRKENVDAGERAKQA. LAFERTDFDQVRSLMENSDRCQDIRNLAFLGIAY
Template Known Secondary structure  TTTS

GGGSTTT





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TT


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   90.........100.........110.........120.........130.... .....140.........150.........160........
 
   78.80.........90.........100.........110.........120.........130.........140.........150...
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Query Sequence  NTGARINEALALTRGDFSLAPPYPFVQLATLKQRTEKAARTAGRMPAGQQTHRLVPLSDSWYVSQLQTMVAQLKIP. . . .
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Template Sequence  NTLLRIAEIARIRVKDISRTDGGRMLIHIGRTKT. . . . . . . . . . . . . LVSTAGVEKALSLGVTKLVERWISVSGVADDPN
Template Known Secondary structure 


SS
BSSSSTTTTS





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   169170.........180.........190.........200.. .......210.........220.........230.....
 
   154.....160.........170.........180.........190.........200.........210.........220........
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Query Sequence  . . . . . MERRNRRTGRTEKARIWEVTDRTVRTWIGEAVAAAAADGVTFSVPVTPHTFRHSYAMHMLYAGIPLKVLQSLMGH
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Template Sequence  NYLFCRVRKNGVAAPSATSQLSTRALEGIFEATHRLIYGAKDDSGQRYLAWSGHSARVGAARDMARAGVSIPEIMQAGGW
Template Known Secondary structure  SBS


B
TTS
B


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S
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TTTT

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   236...240.........250.........260.........270.........280.........290.........300.........310.....
 
   229230.........240....
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Query Sequence  KSISSTEVYTKVFALD
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Template Sequence  TNVNIVMNYIRNLDSE
Template Known Secondary structure  S
STT
GGG
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   316...320.........330.
 
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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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