Job Description P37596 Confidence 100.00% Date Thu Jan 5 11:55:42 GMT 2012 Rank 3 Aligned Residues 369 % Identity 25% Template c3ntaA_ PDB info PDB header:oxidoreductase Chain: A: PDB Molecule:fad-dependent pyridine nucleotide-disulphide PDBTitle: structure of the shewanella loihica pv-4 nadh-dependent persulfide2 reductase Resolution 2.01 Å

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		3	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.		.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.
Predicted Secondary structure																																																						.
Query SS confidence																																																						.
Query Sequence		N	G	I	V	I	I	G	S	G	F	A	A	R	Q	L	V	K	N	I	R	K	Q	D	A	T	I	P	L	T	L	I	A	A	D	S	M	D	E	Y	N	K	P	D	L	S	H	V	I	S	Q	G	Q	.	R	A	D	D	L	T	R	Q	T	A	G	E	F	A	E	Q	F	N	L	H	L	F	P	Q	T	W	V
Query Conservation																																																						.
Alig confidence																																																						.
Template Conservation
Template Sequence		K	K	I	L	I	I	G	G	V	A	G	G	A	S	A	A	A	R	A	R	R	L	S	E	T	A	E	I	I	X	F	E	R	G	E	Y	V	S	F	A	N	C	G	L	P	Y	H	I	S	G	E	I	A	Q	R	S	A	L	V	L	Q	T	P	E	S	F	K	A	R	F	N	V	E	V	R	V	K	H	E	V
Template Known Secondary structure										S	T	T													S	S								S	S	S		S	S	B		G	G	G						T	S	S	S			G	G	G	G	B																	T	T
Template Predicted Secondary structure
Template SS confidence
		2	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.
		82	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.							.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.			.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.			.	140	.	.	.	.	.	.	.	.	.	150	.
Predicted Secondary structure																		.	.	.	.	.	.																						.	.																					.	.
Query SS confidence																		.	.	.	.	.	.																						.	.																					.	.
Query Sequence		T	D	I	D	A	E	A	R	V	V	K	S	Q	N	N	Q	.	.	.	.	.	.	W	Q	Y	D	K	L	V	L	A	T	G	A	S	A	F	V	P	P	V	P	G	.	.	R	E	L	M	L	T	L	N	S	Q	Q	E	Y	R	A	C	E	T	Q	L	.	.	R	D	A	R	R	V	L	I	V	G	G	G	L
Query Conservation																		.	.	.	.	.	.																						.	.																					.	.
Alig confidence																		.	.	.	.	.	.																						.	.																					.	.
Template Conservation
Template Sequence		V	A	I	D	R	A	A	K	L	V	T	V	R	R	L	L	D	G	S	E	Y	Q	E	S	Y	D	T	L	L	L	S	P	G	A	A	P	I	V	P	P	I	P	G	V	D	N	P	L	T	H	S	L	R	N	I	P	D	X	D	R	I	L	Q	T	I	Q	X	N	N	V	E	H	A	T	V	V	G	G	G	F
Template Known Secondary structure						T	T	T	T							T	T	T									S																T	T			S	T	T					S	S														T	T		S								S
Template Predicted Secondary structure
Template SS confidence
		82	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.
		152	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.
Predicted Secondary structure																																																																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																																																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		I	G	S	E	L	A	M	D	F	C	R	A	G	K	A	V	T	L	I	D	N	A	A	S	I	L	A	S	L	M	P	P	E	V	S	S	R	L	Q	H	R	L	T	E	M	G	V	H	L	L	L	K	S	Q	L	Q	G	L	E	K	T	D	S	G	I	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Conservation																																																																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																													.																																						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																													.
Template Sequence		I	G	L	E	X	X	E	S	L	H	H	L	G	I	K	T	T	L	L	E	L	A	D	Q	V	X	T	.	P	V	D	R	E	X	A	G	F	A	H	Q	A	I	R	D	Q	G	V	D	L	R	L	G	T	A	L	S	E	V	S	Y	Q	V	Q	T	H	V	A	S	D	A	A	G	E	D	T	A	H	Q	H	I
Template Known Secondary structure													T	T								S	S	S	S	S		S	.	S	S															T	T						S																	T	T	T	T				T	T			T
Template Predicted Secondary structure																													.
Template SS confidence
		162	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.		.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240
						217	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.			250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280							.	.	.	.
Predicted Secondary structure		.	.	.	.																																		.	.																																.	.	.	.	.	.
Query SS confidence		.	.	.	.																																		.	.																																.	.	.	.	.	.
Query Sequence		.	.	.	.	Q	A	T	L	D	R	Q	R	N	I	E	V	D	A	V	I	A	A	T	G	L	R	P	E	T	A	L	A	R	R	A	G	L	.	.	T	I	N	R	G	V	C	V	D	S	Y	L	Q	T	S	N	T	D	I	Y	A	L	G	D	C	A	E	I	N	G	Q	.	.	.	.	.	.	V	L	P	F
Query Conservation		.	.	.	.																																		.	.																																.	.	.	.	.	.
Alig confidence		.	.	.	.																																		.	.																																.	.	.	.	.	.
Template Conservation
Template Sequence		K	G	H	L	S	L	T	L	S	N	G	E	L	L	E	T	D	L	L	I	X	A	I	G	V	R	P	E	T	Q	L	A	R	D	A	G	L	A	I	G	E	L	G	G	I	K	V	N	A	X	X	Q	T	S	D	P	A	I	Y	A	V	G	D	A	V	E	E	Q	D	F	V	T	G	Q	A	C	L	V	P	L
Template Known Secondary structure		T								T	T	S						S						S												T	T			B		T	T	S	S	B				T	T		B		S	S	T	T					S	T	T	B				B	T	T	T
Template Predicted Secondary structure
Template SS confidence
		241	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320
		285	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.																	.	.	340	.	.	.	.	.	.	.	.
Predicted Secondary structure																																																							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																																							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		L	Q	P	I	Q	L	S	A	M	V	L	A	K	N	L	L	G	N	N	T	P	L	K	L	P	A	M	L	V	K	I	K	T	P	E	L	P	L	H	L	A	G	E	T	Q	R	Q	D	L	R	W	Q	I	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	N	T	E	R	Q	G	M	V	A	R	G
Query Conservation																																																							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																																																							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		A	G	P	A	N	R	Q	G	R	X	A	A	D	N	X	F	G	R	E	E	R	Y	Q	G	T	Q	G	T	A	I	C	K	V	F	D	L	A	V	G	A	T	G	K	N	E	K	Q	L	K	Q	A	G	I	A	F	E	K	V	Y	V	H	T	A	S	H	A	S	Y	Y	P	G	A	E	V	V	S	F	K	L	L
Template Known Secondary structure																	T	T								B									T	T																T	T												S	S		T	T	S	T	T
Template Predicted Secondary structure
Template SS confidence
		321	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400
		349	350		.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.		.	.	370	.	.
Predicted Secondary structure				.																		.
Query SS confidence				.																		.
Query Sequence		V	D	.	D	A	D	Q	L	R	A	F	V	V	S	E	D	R	M	K	E	.	A	F	G	L	L
Query Conservation				.																		.
Alig confidence				.																		.
Template Conservation
Template Sequence		F	D	P	V	K	G	T	I	F	G	A	Q	A	V	G	K	D	G	I	D	K	R	I	D	V	X
Template Known Secondary structure				T	T	T											S	S	S
Template Predicted Secondary structure
Template SS confidence
		401	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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