Phyre 2 alignment of P37596 with c3kpgA

Job Description P37596
Confidence 100.00% Date Thu Jan 5 11:55:42 GMT 2012

Rank 54 Aligned Residues 322

% Identity 16% Template c3kpgA_

PDB info PDB header:oxidoreductase Chain: A: PDB Molecule:sulfide-quinone reductase, putative; PDBTitle: crystal structure of sulfide:quinone oxidoreductase from2 acidithiobacillus ferrooxidans in complex with decylubiquinone

Resolution 2.30 Å

	Insertion relative to template
	Deletion relative to template
	Catalytic residue from the CSA

Detailed help on interpreting your alignment

	1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.		.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																									.
Query SS confidence																									.
Query Sequence	M	S	N	G	I	V	I	I	G	S	G	F	A	A	R	Q	L	V	K	N	I	R	K	Q	.	D	A	T	I	P	L	T	L	I	A	A	D	S	M	D	E	Y	N	K	P	D	L	S	H	V	I	S	Q	G	Q	R	A	D	D	L	T	R	Q	T	A	G	E	F	A	E	Q	F	N	L	H	L	F	P	Q	T
Query Conservation																									.
Alig confidence			.																						.																			.	.
Template Conservation			.																																									.	.
Template Sequence	M	A	.	H	V	V	I	L	G	A	G	T	G	G	M	P	A	A	Y	E	M	K	E	A	L	G	S	G	H	E	V	T	L	I	S	A	N	D	Y	F	Q	F	V	.	.	P	S	N	P	W	V	G	V	G	W	K	E	R	D	D	I	A	F	P	I	R	H	Y	V	E	R	K	G	I	H	F	I	A	Q	S
Template Known Secondary structure			.								S	T	T														T	T	S							S	S	S					G	.	.	G	G							T	S	S															T	T	T
Template Predicted Secondary structure			.																																									.	.
Template SS confidence
	1	.		.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.			.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.

	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.									.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.
Predicted Secondary structure																																															.	.	.	.	.	.	.	.
Query SS confidence																																															.	.	.	.	.	.	.	.
Query Sequence	W	V	T	D	I	D	A	E	A	R	V	V	K	S	Q	N	N	Q	W	Q	Y	D	K	L	V	L	A	T	G	A	S	A	F	V	P	P	V	P	G	R	E	L	M	L	T	L	.	.	.	.	.	.	.	.	N	S	Q	Q	E	Y	R	A	C	E	T	Q	L	R	D	A	R	R	V	L	I	V	G	G	G	L
Query Conservation																																															.	.	.	.	.	.	.	.
Alig confidence																																															.	.	.	.	.	.	.	.
Template Conservation
Template Sequence	A	E	Q	I	D	A	E	A	Q	N	I	T	L	A	D	G	N	T	V	H	Y	D	Y	L	M	I	A	T	G	P	K	L	A	F	E	N	V	P	G	S	D	P	H	E	G	P	V	Q	S	I	C	T	V	D	H	A	E	R	A	F	A	E	Y	Q	A	L	L	R	E	P	G	P	I	V	I	G	A	M	A	G
Template Known Secondary structure						T	T	T	T					T	T	S						S												G	G	G	S	T	T		S	T	T	T	S	S					S	S																	S										T	T
Template Predicted Secondary structure
Template SS confidence
	78	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.

	152	.	.	.	.	.	.	.	160														.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.				.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.
Predicted Secondary structure										.	.	.	.	.	.	.	.	.	.	.	.	.																							.	.	.
Query SS confidence										.	.	.	.	.	.	.	.	.	.	.	.	.																							.	.	.
Query Sequence	I	G	S	E	L	A	M	D	F	.	.	.	.	.	.	.	.	.	.	.	.	.	C	R	A	G	K	A	V	T	L	I	D	N	A	A	S	I	L	A	S	L	M	P	.	.	.	P	E	V	S	S	R	L	Q	H	R	L	T	E	M	G	V	H	L	L	L	K	S	Q	L	Q	G	L	E	K	T	D	S	G
Query Conservation										.	.	.	.	.	.	.	.	.	.	.	.	.																							.	.	.
Alig confidence										.	.	.	.	.	.	.	.	.	.	.	.	.																							.	.	.
Template Conservation
Template Sequence	A	S	C	F	G	P	A	Y	E	Y	A	M	I	V	A	S	D	L	K	K	R	G	M	R	D	K	I	P	S	F	T	F	I	T	S	E	P	Y	I	G	H	L	G	I	Q	G	V	G	D	S	K	G	I	L	T	K	G	L	K	E	E	G	I	E	A	Y	T	N	C	K	V	T	K	V	E	D	N	K	M	Y
Template Known Secondary structure																						T		G	G	G		S							S	S	S	S	T	T		T	T	T	T			T	T												T	T						S								T	T
Template Predicted Secondary structure
Template SS confidence
	158	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.

	216	.	.	.	220	.	.	.	.	.						.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.		250	.	.	.	.	.	.	.	.	.	260	.	.		.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280
Predicted Secondary structure											.	.	.	.	.																									.														.																			.	.	.	.	.	.	.	.
Query SS confidence											.	.	.	.	.																									.														.																			.	.	.	.	.	.	.	.
Query Sequence	I	Q	A	T	L	D	R	Q	R	N	.	.	.	.	.	I	E	V	D	A	V	I	A	A	T	G	L	R	P	E	T	A	L	A	R	R	A	G	L	.	T	I	N	R	G	V	C	V	D	S	Y	L	Q	.	T	S	N	T	D	I	Y	A	L	G	D	C	A	E	I	N	G	Q	.	.	.	.	.	.	.	.
Query Conservation											.	.	.	.	.																									.														.																			.	.	.	.	.	.	.	.
Alig confidence											.	.	.	.	.																									.														.																			.	.	.	.	.	.	.	.
Template Conservation
Template Sequence	V	T	Q	V	D	E	K	G	E	T	I	K	E	M	V	L	P	V	K	F	G	M	M	I	P	A	F	K	G	V	P	A	V	A	G	V	E	G	L	C	N	P	G	G	F	V	L	V	D	E	H	Q	R	S	K	K	Y	A	N	I	F	A	A	G	I	A	I	A	I	P	P	V	E	T	T	P	V	P	T	G
Template Known Secondary structure						T	T	S											S																T	S	T	T	T	B		T	T	S		B		B		T	T	S	B	B	S	S		T	T					G	G	G	B					S				S	S
Template Predicted Secondary structure
Template SS confidence
	238	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.

	281	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300						.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.
Predicted Secondary structure																					.	.	.	.	.
Query SS confidence																					.	.	.	.	.
Query Sequence	V	L	P	F	L	Q	P	I	Q	L	S	A	M	V	L	A	K	N	L	L	.	.	.	.	.	G	N	N	T	P	L	K	L	P	A	M	L	V	K	I	K	T	P	E	L	P	L	H	L	A
Query Conservation																					.	.	.	.	.
Alig confidence																					.	.	.	.	.
Template Conservation
Template Sequence	A	P	K	T	G	Y	M	I	E	S	M	V	S	A	A	V	H	N	I	K	A	D	L	E	G	R	K	G	E	Q	T	M	G	T	W	N	A	V	C	F	A	D	M	G	D	R	G	A	A	F
Template Known Secondary structure																							T	T	T									S										S	S
Template Predicted Secondary structure
Template SS confidence
	318	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server

Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]

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Lawrence Kelley, Benjamin Jefferys
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