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Job DescriptionP37596
Confidence100.00%DateThu Jan 5 11:55:42 GMT 2012
Rank42Aligned Residues364
% Identity18%Templatec3dgzA_
PDB info PDB header:oxidoreductaseChain: A: PDB Molecule:thioredoxin reductase 2; PDBTitle: crystal structure of mouse mitochondrial thioredoxin reductase, c-2 terminal 3-residue truncation
Resolution2.25 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   2.......10.........20.........30.........40......
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Query Sequence  SNGIVIIGSGFAARQLVKNIRKQDATIPLTLIAADSMDEYNKPDL. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
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Template Sequence  SFDLLVIGGGSGGLACAKEAAQLGK. . KVAVADYVEPSPRGTKWGLGGTCVNVGCIPKKLMHQAALLGGMIRDAHHYGWE
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STT
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TTS



TT
STT

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   6...10.........20.........30 .........40.........50.........60.........70.........80...
 
   47..50.........60.........70.........80.........90....... ..100.........110.....
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Query Sequence  . . . . . . . . . SHVISQGQRADDLTRQTAGEFAEQFNLHLFPQTWVTDIDAEARVVKSQNNQ. . WQYDKLVLATGASAFVPP
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Template Sequence  VAQPVQHNWKTMAEAVQNHVKSLNWGHRVQLQDRKVKYFNIKASFVDEHTVRGVDKGGKATLLSAEHIVIATGGRPRYPT
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SS



TT


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S
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   84.....90.........100.........110.........120.........130.........140.........150.........160...
 
   116...120.........130.........140.........150.........160.........170.........180.........190.....
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Query Sequence  VPGRELMLTLNSQQEYRACETQLRDARRVLIVGGGLIGSELAMDFCRAGKAVTLIDNAASILASLMPPEVSSRLQHRLTE
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Template Sequence  QVKGALEYGITSDD. . . . IFWLKESPGKTLVVGASYVALECAGFLTGIGLDTTVMMRSIPL. . RGFDQQMSSLVTEHMES
Template Known Secondary structure  S
BT
B
....TT
SS


S

STT

SS
SS..TTS
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   164.....170....... ..180.........190.........200.........210.........220 .........230.......
 
   196...200.........210.........220 .........230.........240... ......250.. .......260....
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Query Sequence  MGVHLLLKSQLQGLEKTDSGIQATL. . . . . . DRQRNIEVDAVIAATGLRPETAL. . ARRAGLTIN. . . RGVCVDSYLQTS
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Template Sequence  HGTQFLKGCVPSHIKKLPTNQLQVTWEDHASGKEDTGTFDTVLWAIGRVPETRTLNLEKAGISTNPKNQKIIVDAQEATS
Template Known Secondary structure  TT
T
TTS
TTTTS
S
S
GGGTGGGGT

B
SSS

B


TTSB
S
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   238.240.........250.........260.........270.........280.........290.........300.........310.......
 
   265....270.........280.........290.........300.........310.........320.........330....
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Query Sequence  NTDIYALGDCAEINGQVLPFLQPIQLSAMVLAKNLLGNNTPLKLPAMLVKIKTPELPLHLAGETQRQDLR. . . . . . . . . .
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Template Sequence  VPHIYAIGDVAEGR. . . PELTPTAIKAGKLLAQRLFGKSSTLMDYSNVPTTVFTPLEYGCVGLSEEEAVALHGQEHVEVY
Template Known Secondary structure  STT
GGGBTT
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S







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GGG
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   318.320.........330. ........340.........350.........360.........370.........380.........390....
 
   335....340.........350. ........360.........370.......
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Query Sequence  . . . . . . . . . . WQINTERQGMVARGVDD. . ADQLRAFVVSEDRMKEAFGLLKTLPM
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Template Sequence  HAYYKPLEFTVADRDASQCYIKMVCMREPPQLVLGLHFLGPNAGEVTQGF. ALGI
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TT


TT
SSTT
BTT.
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   395....400.........410.........420.........430.........440.... ....
 
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No model constructed - rank, confidence too low




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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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