Job Description P37596 Confidence 99.14% Date Thu Jan 5 11:55:42 GMT 2012 Rank 179 Aligned Residues 238 % Identity 12% Template c3cpiH_ PDB info PDB header:protein transport Chain: H: PDB Molecule:rab gdp-dissociation inhibitor; PDBTitle: crystal structure of yeast rab-gdi Resolution 2.30 Å

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		1	.	.			.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.																															.
Predicted Secondary structure					.	.																																													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence					.	.																																													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		M	S	N	.	.	G	I	V	I	I	G	S	G	F	A	A	R	Q	L	V	K	N	I	R	K	Q	D	A	T	I	P	L	T	L	I	A	A	D	S	M	D	E	Y	N	K	P	D	L	S	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	H
Query Conservation					.	.																																													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence					.	.																								.	.																				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																														.	.
Template Sequence		I	D	T	D	Y	D	V	I	V	L	G	T	G	I	T	E	C	I	L	S	G	L	L	S	V	D	G	K	.	.	K	V	L	H	I	D	K	Q	D	H	Y	G	G	E	A	A	S	V	T	L	S	Q	L	Y	E	K	F	K	Q	N	P	I	S	K	E	E	R	E	S	K	F	G	K	D	R	D	W	N	V	D
Template Known Secondary structure					B		S							S													T	T		.	.							S	S	S	S	S		T	T	S														S	S											T			G	G	G
Template Predicted Secondary structure																														.	.
Template SS confidence
		6	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.			.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.
		49	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110														.	.	.	.	.
Predicted Secondary structure																																																																.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																																																.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		V	I	S	Q	G	Q	R	A	D	D	L	T	R	Q	T	A	G	E	F	A	E	Q	F	N	L	H	L	F	P	Q	T	W	V	T	D	I	D	A	E	A	R	V	V	K	S	Q	N	N	Q	W	Q	Y	D	K	L	V	L	A	T	G	A	S	.	.	.	.	.	.	.	.	.	.	.	.	.	A	F	V	P	P
Query Conservation																																																																.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																																																																.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		L	I	P	K	F	L	M	A	N	G	E	L	T	N	I	L	I	H	T	D	V	T	R	Y	V	D	F	K	Q	V	S	G	S	Y	V	F	K	Q	G	K	I	Y	K	V	P	A	N	E	I	E	A	I	S	S	P	L	M	G	I	F	E	K	R	R	M	K	K	F	L	E	W	I	S	S	Y	K	E	D	D	L
Template Known Secondary structure		S	S			B			T	T	S										T	G	G	G	S							S							T	T								S								T	T	S																			B	T	T	B	G
Template Predicted Secondary structure
Template SS confidence
		84	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.
		116	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.										.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.
Predicted Secondary structure																																							.	.	.	.	.	.	.	.	.
Query SS confidence																																							.	.	.	.	.	.	.	.	.
Query Sequence		V	P	G	R	E	L	M	L	T	L	N	S	Q	Q	E	Y	R	A	C	E	T	Q	L	R	D	A	R	R	V	L	I	V	G	G	G	L	I	.	.	.	.	.	.	.	.	.	G	S	E	L	A	M	D	F	C	R	A	G	K	A	V	T	L	I	D	N	A	A	S	I	L	A	S	L	M	P	P	E	V	S
Query Conservation																																							.	.	.	.	.	.	.	.	.
Alig confidence																																							.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		S	T	H	Q	G	L	D	L	D	K	N	T	M	D	E	V	Y	Y	K	F	G	L	G	N	S	T	K	E	F	I	G	H	A	M	A	L	W	T	N	D	D	Y	L	Q	Q	P	A	R	P	S	F	E	R	I	L	L	Y	C	Q	S	V	A	R	Y	G	K	S	P	Y	L	Y	P	M	Y	G	L	G	E	L	P
Template Known Secondary structure		G	G	G	T	T			T	T	T	S	B									T													T	S			S	S	S	G	G	G	G	S	B																			S	S		S					T	T		T	T
Template Predicted Secondary structure
Template SS confidence
		164	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.
		187	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.			.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240
Predicted Secondary structure																											.	.
Query SS confidence																											.	.
Query Sequence		S	R	L	Q	H	R	L	T	E	M	G	V	H	L	L	L	K	S	Q	L	Q	G	L	E	K	.	.	T	D	S	G	I	Q	A	T	L	D	R	Q	R	N	I	E	V	D	A	V	I	A	A	T	G	L	R	P	E
Query Conservation																											.	.
Alig confidence																											.	.
Template Conservation
Template Sequence		Q	G	F	A	R	L	S	A	I	Y	G	G	T	Y	M	L	D	T	P	I	D	E	V	L	Y	K	K	D	T	G	K	F	E	G	V	K	T	K	L	G	T	F	K	A	P	L	V	I	A	D	P	T	Y	F	P	E
Template Known Secondary structure											T	T						S										T	T	T									T	T						S						G	G	G		G	G
Template Predicted Secondary structure
Template SS confidence
		244	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions