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Job DescriptionP37596
Confidence99.20%DateThu Jan 5 11:55:42 GMT 2012
Rank170Aligned Residues242
% Identity15%Templatec2yg4B_
PDB info PDB header:oxidoreductaseChain: B: PDB Molecule:putrescine oxidase; PDBTitle: structure-based redesign of cofactor binding in putrescine2 oxidase: wild type bound to putrescine
Resolution2.30 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   1........10.........20.........30.........40.. .......50.........60.........70.....
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Query Sequence  MSNGIVIIGSGFAARQLVKNIRKQDATIPLTLIAADSMDEYN. . . . . KPDLSHVISQGQRADDLTRQTAGEFAEQFNLHL
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Template Sequence  LQRDVAIVGAGPSGLAAATALRKAGL. . SVAVIEARDRVGGRTWTDTIDGAVLEIGGQWVSPD. . QTALISLLDELGL. .
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STT
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SSSSS
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B
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   4.....10.........20......... 30.........40.........50.........60.... .....70.......
 
   76...80.........90.........100... ......110.........120......
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Query Sequence  FPQTWVTDIDAEARVVKSQNNQWQYDKL. . . . . . . . . . . . . . . . . . . . . . . . . . . . . VLATGASAFVPPVPGRELMLTLN
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Template Sequence  . . KTFERYREGESVYISSAGERTRYTGDSFPTNETTKKEMDRLIDEMDDLAAQIGAEEPWAHPLARDLDTVSFKQWLINQ
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GGGSTTTSB
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   78.80.........90.........100.........110.........120.........130.........140.........150.....
 
   127..130.........140.........150.........160.........170.........180.........190.........200......
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Query Sequence  SQQEYRACETQLRDARRVLIVGGGLIGSELAMDFCRAGKAVTLIDNAASILASLMPPEVSSRLQHRLTEMGVHLLLKSQL
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Template Sequence  SDDAEARDNIGLFIAGGMLTKPAHSFSALQAVLMAASAGSFSHLVDEDFILDKRVIGGMQQVSIRMAEALGDDVFLNAPV
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TTSSBTT

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   156...160.........170.........180.........190.........200.........210.........220.........230.....
 
   207..210.........220.........230.........240.........250
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Query Sequence  QGLEKTDSGIQATLDRQRNIEVDAVIAATGLRPETALARRAGLT
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Template Sequence  RTVKWNESGATVLADGDIRVEASRVILAVPPNLYSRISYDPPLP
Template Known Secondary structure  TTTTT
S
GGGGGGSS


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   236...240.........250.........260.........270.........
 
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No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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Lawrence Kelley, Benjamin Jefferys 
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