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Job DescriptionP37596
Confidence98.97%DateThu Jan 5 11:55:42 GMT 2012
Rank205Aligned Residues210
% Identity12%Templatec2rghA_
PDB info PDB header:oxidoreductaseChain: A: PDB Molecule:alpha-glycerophosphate oxidase; PDBTitle: structure of alpha-glycerophosphate oxidase from2 streptococcus sp.: a template for the mitochondrial alpha-3 glycerophosphate dehydrogenase
Resolution2.30 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   2.......10.........20.........30.........40.........50.........60.........70.........80.
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Query Sequence  SNGIVIIGSGFAARQLVKNIRKQDATIPLTLIAADSMDEYNKPDLSHVISQGQRADDLTRQTAGEFAEQFNLHLFPQTWV
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Template Sequence  ELDLLIIGGGITGAGVAVQAAASGIK. . TGLIEXQDFAEGTSSRSTKLVHGGIRYLKTFDVEVVADTVGE. . . . . . . . . .
Template Known Secondary structure 
BS

STT

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SSSTT
SGGGSS
S


GGGGGGT
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   18.20.........30.........40... ......50.........60.........70.........80.....
 
   82.......90.........100.........110.........120.........130.........140.........150.........160.
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Query Sequence  TDIDAEARVVKSQNNQWQYDKLVLATGASAFVPPVPGRELMLTLNSQQEYRACETQLRDARRVLIVGGGLIGSELAMDFC
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Template Sequence  . . . . . . . . . . . . . RAVVQGIAPHIPKPDPXLLPIYEDEGATTFNXFSVKVAXDLYDKLANVTGTKYENYTLTPEEVLERE
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TTSS

SSSSS
S

T
SSSTT



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   86...90.........100.........110.........120.........130.........140.........150..
 
   162.......170.........180.........190.........200.........210....... ..220.........230.....
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Query Sequence  RAGKAVTLIDNAASILASLMPPEVSSRLQHRLTEMGVHLLLKSQLQGLEKTDSGIQ. . . . . . ATLDRQRNIEVDAVIAAT
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Template Sequence  PFLKKEGLKGAGVYLDFRNNDARLVIDNIKKAAEDGAYLVSKXKAVGFLYEGDQIVGVKARDLLTDEVIEIKAKLVINTS
Template Known Secondary structure  TTS

TT



TT
SSTTTTT

BS


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   153......160.........170.........180.........190.........200.........210.........220.........230..
 
   236
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Query Sequence  G
Query Conservation 
Alig confidence 
Template Conservation 
Template Sequence  G
Template Known Secondary structure  G
Template Predicted Secondary structure 
Template SS confidence 
   233
 
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No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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Lawrence Kelley, Benjamin Jefferys 
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