Job Description P37596 Confidence 100.00% Date Thu Jan 5 11:55:42 GMT 2012 Rank 25 Aligned Residues 361 % Identity 17% Template c2eq7B_ PDB info PDB header:oxidoreductase Chain: B: PDB Molecule:2-oxoglutarate dehydrogenase e3 component; PDBTitle: crystal structure of lipoamide dehydrogenase from thermus thermophilus2 hb8 with psbdo Resolution 1.80 Å

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		3	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.																																			.	.	.	.	.	.
Predicted Secondary structure																																										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		N	G	I	V	I	I	G	S	G	F	A	A	R	Q	L	V	K	N	I	R	K	Q	D	A	T	I	P	L	T	L	I	A	A	D	S	M	D	E	Y	N	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	K	P	D	L	S	H
Query Conservation																																										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																										.	.															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																										.	.
Template Sequence		Y	D	L	L	V	I	G	A	G	P	G	G	Y	V	A	A	I	R	A	A	Q	L	G	M	.	.	K	V	G	V	V	E	K	E	K	A	L	G	G	T	C	L	R	V	G	C	I	P	S	K	A	L	L	E	T	T	E	R	I	Y	E	A	K	K	G	L	L	G	A	K	V	K	G	V	E	L	D	L	P	A
Template Known Secondary structure										S													T	T		.	.							S	S	S	S	S	S							S																						T	T				S
Template Predicted Secondary structure																										.	.
Template SS confidence
		2	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.			.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.
		49	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		V	I	S	Q	G	Q	R	A	D	D	L	T	R	Q	T	A	G	E	F	A	E	Q	F	N	L	H	L	F	P	Q	T	W	V	T	D	I	D	A	E	A	R	V	V	K	S	Q	N	N	Q	W	Q	Y	D	K	L	V	L	A	T	G	A	S	A	F	V	P	P	V	P	G	R	E	L	M	L	T	L	N	S	Q
Query Conservation
Alig confidence																															.
Template Conservation																															.
Template Sequence		L	M	A	H	K	D	K	V	V	Q	A	N	T	Q	G	V	E	F	L	F	K	K	N	G	I	A	R	H	Q	.	G	T	A	R	F	L	S	E	R	K	V	L	V	E	E	T	G	E	E	L	E	A	R	Y	I	L	I	A	T	G	S	A	P	L	I	P	P	W	A	Q	V	D	Y	E	R	V	V	T	S	T
Template Known Secondary structure																								T	T						.	S					S	S	S	S					T	T	T	T																				T	T	B				S	S	S
Template Predicted Secondary structure																															.
Template SS confidence
		80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.		.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.
		129	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		Q	E	Y	R	A	C	E	T	Q	L	R	D	A	R	R	V	L	I	V	G	G	G	L	I	G	S	E	L	A	M	D	F	C	R	A	G	K	A	V	T	L	I	D	N	A	A	S	I	L	A	S	L	M	P	P	E	V	S	S	R	L	Q	H	R	L	T	E	M	G	V	H	L	L	L	K	S	Q	L	Q	G
Query Conservation
Alig confidence			.	.	.	.																																														.
Template Conservation			.	.	.	.																																														.
Template Sequence		E	.	.	.	.	A	L	S	F	P	E	V	P	K	R	L	I	V	V	G	G	G	V	I	G	L	E	L	G	V	V	W	H	R	L	G	A	E	V	I	V	L	E	Y	M	D	R	I	L	P	.	T	M	D	L	E	V	S	R	A	A	E	R	V	F	K	K	Q	G	L	T	I	R	T	G	V	R	V	T	A
Template Known Secondary structure			.	.	.	.		T	S		S	S			S								S													T	T								S	S	S	S	S		T	.	T	S																T						S
Template Predicted Secondary structure			.	.	.	.																																														.
Template SS confidence
		159					160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.		.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.
		209	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.					.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.
Predicted Secondary structure																																													.	.	.	.
Query SS confidence																																													.	.	.	.
Query Sequence		L	E	K	T	D	S	G	I	Q	A	T	L	D	R	Q	R	N	I	E	V	D	A	V	I	A	A	T	G	L	R	P	E	T	A	L	A	R	R	A	G	L	T	I	.	.	.	.	N	R	G	V	C	V	D	S	Y	L	Q	T	S	N	T	D	I	Y	A	L	G	D	C	A	E	I	N	G	Q	V	L	P	F
Query Conservation																																													.	.	.	.
Alig confidence																																													.	.	.	.																											.	.	.	.
Template Conservation																																																																											.	.	.	.
Template Sequence		V	V	P	E	A	K	G	A	R	V	E	L	E	G	G	E	V	L	E	A	D	R	V	L	V	A	V	G	R	R	P	Y	T	E	G	L	S	L	E	N	A	G	L	S	T	D	E	R	G	R	I	P	V	D	E	H	L	R	T	R	V	P	H	I	Y	A	I	G	D	V	V	R	G	.	.	.	.	P	M	L
Template Known Secondary structure						T	T							T	T	S						S						S							T	T			G	G	G	G	T					T	T	S						T	T	S	B		S	S	T	T					G	G	G	S	S	S	.	.	.	.
Template Predicted Secondary structure																																																																											.	.	.	.
Template SS confidence
		234	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.					.	.	.
		285	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.																		.	.	.	.	.	.	340	.	.	.	.	.	.	.
Predicted Secondary structure																																																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		L	Q	P	I	Q	L	S	A	M	V	L	A	K	N	L	L	G	N	N	T	P	L	K	L	P	A	M	L	V	K	I	K	T	P	E	L	P	L	H	L	A	G	E	T	Q	R	Q	D	L	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	R	W	Q	I	N	T	E	R	Q	G	M	V	A	R
Query Conservation																																																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																																	.																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																	.
Template Sequence		A	H	K	A	S	E	E	G	I	A	A	V	E	H	M	V	R	G	F	G	H	V	D	Y	Q	A	I	P	S	V	V	.	Y	T	H	P	E	I	A	A	V	G	Y	T	E	E	E	L	K	A	Q	G	I	P	Y	K	V	G	K	F	P	Y	S	A	S	G	R	A	R	A	M	G	E	T	E	G	F	I	K	V
Template Known Secondary structure																			S						G	G	G						.		S	S	S															T	T										G	G	G								T
Template Predicted Secondary structure																																	.
Template SS confidence
		310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340		.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.
		348	.	350		.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.
Predicted Secondary structure					.
Query SS confidence					.
Query Sequence		G	V	D	.	D	A	D	Q	L	R	A	F	V	V	S	E	D	R	M	K	E	A	F	G	L	L	K	T	L	P	M
Query Conservation					.
Alig confidence					.																							.
Template Conservation																												.
Template Sequence		L	A	H	A	K	T	D	R	I	L	G	V	H	G	I	G	A	R	V	G	D	V	L	A	E	A	.	A	L	A	L
Template Known Secondary structure					T	T	T		B									T	T									.
Template Predicted Secondary structure																												.
Template SS confidence
		389	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.		.	.	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions