Job Description P37596 Confidence 100.00% Date Thu Jan 5 11:55:42 GMT 2012 Rank 9 Aligned Residues 373 % Identity 24% Template c2bcpA_ PDB info PDB header:oxidoreductase Chain: A: PDB Molecule:nadh oxidase; PDBTitle: structural analysis of streptococcus pyogenes nadh oxidase:2 c44s nox with azide Resolution 2.10 Å

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		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.				.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.
Predicted Secondary structure																										.	.	.
Query SS confidence																										.	.	.
Query Sequence		M	S	N	G	I	V	I	I	G	S	G	F	A	A	R	Q	L	V	K	N	I	R	K	Q	.	.	.	D	A	T	I	P	L	T	L	I	A	A	D	S	M	D	E	Y	N	K	P	D	L	S	H	V	I	S	Q	G	Q	R	A	D	D	L	T	R	Q	T	A	G	E	F	A	E	Q	F	N	L	H	L	F	P
Query Conservation																										.	.	.
Alig confidence																										.	.	.			.	.
Template Conservation																															.	.
Template Sequence		W	G	S	K	I	V	V	V	G	A	N	H	A	G	T	A	C	I	K	T	M	L	T	N	Y	G	D	A	N	.	.	E	I	V	V	F	D	Q	N	S	N	I	S	F	L	G	S	G	M	A	L	W	I	G	E	Q	I	A	G	P	E	G	L	F	Y	S	D	K	E	E	L	E	S	L	G	A	K	V	Y	M
Template Known Secondary structure												S															G	G	G	S	.	.							S	S	S				B		T	T							T	T	S	S	S	S	S	T	T	S	B									T	T	T					T
Template Predicted Secondary structure																															.	.
Template SS confidence
		0	.	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.			.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.
		78	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.					.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120																.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.
Predicted Secondary structure																		.	.	.	.																												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																		.	.	.	.																												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		Q	T	W	V	T	D	I	D	A	E	A	R	V	V	K	S	.	.	.	.	Q	N	N	Q	W	Q	Y	D	K	L	V	L	A	T	G	A	S	A	F	V	P	P	V	P	G	R	E	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	L	M	L	T	L	N	S	Q	Q	E	Y	R	A	C	E	T	Q	L
Query Conservation																		.	.	.	.																												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																		.	.	.	.																												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		E	S	P	V	Q	S	I	D	Y	D	A	K	T	V	T	A	L	V	D	G	K	N	H	V	E	T	Y	D	K	L	I	F	A	T	G	S	Q	P	I	L	P	P	I	K	G	A	E	I	K	E	G	S	L	E	F	E	A	T	L	E	N	L	Q	F	V	K	L	Y	Q	N	S	A	D	V	I	A	K	L	E	N
Template Known Secondary structure		T								T	T	T	T						S	S	S	S							S														S		B	T			B		T	T		S	S			B	S	S	T	T					S	S											T	T
Template Predicted Secondary structure
Template SS confidence
		78	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.
		139	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		R	D	A	R	R	V	L	I	V	G	G	G	L	I	G	S	E	L	A	M	D	F	C	R	A	G	K	A	V	T	L	I	D	N	A	A	S	I	L	A	S	L	M	P	P	E	V	S	S	R	L	Q	H	R	L	T	E	M	G	V	H	L	L	L	K	S	Q	L	Q	G	L	E	K	T	D	S	G	I	Q	A
Query Conservation
Alig confidence																																																																										.
Template Conservation																																																																										.
Template Sequence		K	D	I	K	R	V	A	V	V	G	A	G	Y	I	G	V	E	L	A	E	A	F	Q	R	K	G	K	E	V	V	L	I	D	V	V	D	T	C	L	A	G	Y	Y	D	R	D	L	T	D	L	M	A	K	N	M	E	E	H	G	I	Q	L	A	F	G	E	T	V	K	E	V	A	.	G	N	G	K	V	E	K
Template Known Secondary structure		T	T										S													T	T								S	S	S	S	S	S	T	T	T	S														T	T	T						S								.		S	S	S
Template Predicted Secondary structure																																																																										.
Template SS confidence
		158	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.		230	.	.	.	.	.	.
		219	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.		.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280							.	.	.	.	.	.	.	.	.	290	.
Predicted Secondary structure																																.																																	.	.	.	.	.	.
Query SS confidence																																.																																	.	.	.	.	.	.
Query Sequence		T	L	D	R	Q	R	N	I	E	V	D	A	V	I	A	A	T	G	L	R	P	E	T	A	L	A	R	R	A	G	.	L	T	I	N	R	G	V	C	V	D	S	Y	L	Q	T	S	N	T	D	I	Y	A	L	G	D	C	A	E	I	N	G	Q	.	.	.	.	.	.	V	L	P	F	L	Q	P	I	Q	L	S
Query Conservation																																.																																	.	.	.	.	.	.
Alig confidence																																.																																	.	.	.	.	.	.
Template Conservation
Template Sequence		I	I	T	D	K	N	E	Y	D	V	D	M	V	I	L	A	V	G	F	R	P	N	T	T	L	G	N	G	K	I	D	L	F	R	N	G	A	F	L	V	N	K	R	Q	E	T	S	I	P	G	V	Y	A	I	G	D	C	A	T	I	Y	D	N	A	T	R	D	T	N	Y	I	A	L	A	S	N	A	V	R	T
Template Known Secondary structure					S	S						S													G	G	G	T	T	S	S		B		T	T	S		B				T	T		B		S	S	T	T					G	G	G	B					T	T	T	T
Template Predicted Secondary structure
Template SS confidence
		237	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.
		292	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.																		.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350		.	.	.
Predicted Secondary structure																																												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																		.
Query SS confidence																																												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																		.
Query Sequence		A	M	V	L	A	K	N	L	L	G	N	N	T	P	L	K	L	P	A	M	L	V	K	I	K	T	P	E	L	P	L	H	L	A	G	E	T	Q	R	Q	D	L	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	R	W	Q	I	N	T	E	R	Q	G	M	V	A	R	G	V	D	.	D	A	D
Query Conservation																																												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																		.
Alig confidence																																												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																		.
Template Conservation
Template Sequence		G	I	V	A	A	H	N	A	C	G	T	D	L	E	G	I	G	V	Q	G	S	N	G	I	S	I	Y	G	L	H	M	V	S	T	G	L	T	L	E	K	A	K	R	L	G	F	D	A	A	V	T	E	Y	T	D	N	Q	K	P	E	F	I	E	H	G	N	F	P	V	T	I	K	I	V	Y	D	K	D	S	R
Template Known Secondary structure										T	T								B									T	T																T	T												S	S		T	T			S	S												T	T	T
Template Predicted Secondary structure
Template SS confidence
		317	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.
		354	.	.	.	.	.	360	.	.		.	.	.	.	.	.	.	370	.	.	.	.	.	.	.
Predicted Secondary structure											.
Query SS confidence											.
Query Sequence		Q	L	R	A	F	V	V	S	E	.	D	R	M	K	E	A	F	G	L	L	K	T	L	P	M
Query Conservation											.
Alig confidence											.											.
Template Conservation																						.
Template Sequence		R	I	L	G	A	Q	M	A	A	R	E	D	V	S	M	G	I	H	M	F	.	S	L	A	I
Template Known Secondary structure		B									S	S			T	T						.
Template Predicted Secondary structure																						.
Template SS confidence
		397	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.		.	.	.	420

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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