Job Description P37596 Confidence 100.00% Date Thu Jan 5 11:55:42 GMT 2012 Rank 47 Aligned Residues 361 % Identity 17% Template c2a8xA_ PDB info PDB header:oxidoreductase Chain: A: PDB Molecule:dihydrolipoyl dehydrogenase; PDBTitle: crystal structure of lipoamide dehydrogenase from2 mycobacterium tuberculosis Resolution 2.40 Å

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		3	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.																																			.	.	40	.	.	.	.	.	.	.	.
Predicted Secondary structure																																					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		N	G	I	V	I	I	G	S	G	F	A	A	R	Q	L	V	K	N	I	R	K	Q	D	A	T	I	P	L	T	L	I	A	A	D	S	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	M	D	E	Y	N	K	P	D	L	S	H
Query Conservation																																					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																										.	.										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																										.	.
Template Sequence		Y	D	V	V	V	L	G	A	G	P	G	G	Y	V	A	A	I	R	A	A	Q	L	G	L	.	.	S	T	A	I	V	E	P	K	Y	W	G	G	V	C	L	N	V	G	C	I	P	S	K	A	L	L	R	N	A	E	L	V	H	I	F	T	K	D	A	K	A	F	G	I	S	G	E	V	T	F	D	Y	G	I
Template Known Secondary structure										S													T	T		.	.							S	S		T	T							S																					T	T	T	T	T			S
Template Predicted Secondary structure																										.	.
Template SS confidence
		4	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.			.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.
		49	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.			.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.
Predicted Secondary structure																																																	.	.
Query SS confidence																																																	.	.
Query Sequence		V	I	S	Q	G	Q	R	A	D	D	L	T	R	Q	T	A	G	E	F	A	E	Q	F	N	L	H	L	F	P	Q	T	W	V	T	D	I	D	A	E	A	R	V	V	K	S	Q	N	.	.	N	Q	W	Q	Y	D	K	L	V	L	A	T	G	A	S	A	F	V	P	P	V	P	G	R	E	L	M	L	T	L	N
Query Conservation																																																	.	.
Alig confidence																																																	.	.																															.
Template Conservation																																																																																	.
Template Sequence		A	Y	D	R	S	R	K	V	A	E	G	R	V	A	G	V	H	F	L	X	K	K	N	K	I	T	E	I	H	G	Y	G	T	F	A	D	A	N	T	L	L	V	D	L	N	D	G	G	T	E	S	V	T	F	D	N	A	I	I	A	T	G	S	S	T	R	L	V	P	G	T	S	L	S	A	N	V	V	T	.
Template Known Secondary structure																								T	T											S	S	S	S							T	T	S																						T	T				B	T	T				.
Template Predicted Secondary structure																																																																																	.
Template SS confidence
		82	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160
		127	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		S	Q	Q	E	Y	R	A	C	E	T	Q	L	R	D	A	R	R	V	L	I	V	G	G	G	L	I	G	S	E	L	A	M	D	F	C	R	A	G	K	A	V	T	L	I	D	N	A	A	S	I	L	A	S	L	M	P	P	E	V	S	S	R	L	Q	H	R	L	T	E	M	G	V	H	L	L	L	K	S	Q	L
Query Conservation
Alig confidence		.	.	.	.																																																	.
Template Conservation		.	.	.	.																																																	.
Template Sequence		.	.	.	.	Y	E	E	Q	I	L	S	R	E	L	P	K	S	I	I	I	A	G	A	G	A	I	G	X	E	F	G	Y	V	L	K	N	Y	G	V	D	V	T	I	V	E	F	L	P	R	A	L	P	.	N	E	D	A	D	V	S	K	E	I	E	K	Q	F	K	K	L	G	V	T	I	L	T	A	T	K	V
Template Known Secondary structure		.	.	.	.						T		S	S			S								S													T	T								S	S	S	S	S	S	T	.	T	S																T						S
Template Predicted Secondary structure		.	.	.	.																																																	.
Template SS confidence
						161	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.		.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.
		207	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.				.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.					.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																			.	.	.																							.	.	.	.
Query SS confidence																			.	.	.																							.	.	.	.
Query Sequence		Q	G	L	E	K	T	D	S	G	I	Q	A	T	L	D	R	Q	.	.	.	R	N	I	E	V	D	A	V	I	A	A	T	G	L	R	P	E	T	A	L	A	R	.	.	.	.	R	A	G	L	T	I	N	R	G	V	C	V	D	S	Y	L	Q	T	S	N	T	D	I	Y	A	L	G	D	C	A	E	I	N	G
Query Conservation																			.	.	.																							.	.	.	.
Alig confidence																			.	.	.																							.	.	.	.																																	.	.
Template Conservation																																																																																.	.
Template Sequence		E	S	I	A	D	G	G	S	Q	V	T	V	T	V	T	K	D	G	V	A	Q	E	L	K	A	E	K	V	L	Q	A	I	G	F	A	P	N	V	E	G	Y	G	L	D	K	A	G	V	A	L	T	D	R	K	A	I	G	V	D	D	Y	X	R	T	N	V	G	H	I	Y	A	I	G	D	V	N	G	L	.	.
Template Known Secondary structure								S	S								S	S	S								S						S							S	S	S						T			B		T	T	S	S	B				T	T	S	B		S	S	T	T					G	G	G	G		S	.	.
Template Predicted Secondary structure																																																																																.	.
Template SS confidence
		236	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.
		280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.			.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.																		.	.	.	.	.	.	340
Predicted Secondary structure																										.	.																															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																										.	.																															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		Q	V	L	P	F	L	Q	P	I	Q	L	S	A	M	V	L	A	K	N	L	L	G	N	N	.	.	T	P	L	K	L	P	A	M	L	V	K	I	K	T	P	E	L	P	L	H	L	A	G	E	T	Q	R	Q	D	L	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	R	W	Q	I	N	T	E
Query Conservation																										.	.																															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence		.	.																							.	.													.																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation		.	.																																					.
Template Sequence		.	.	L	Q	L	A	H	V	A	E	A	Q	G	V	V	A	A	E	T	I	A	G	A	E	T	L	T	L	G	D	H	R	X	L	P	R	A	T	.	F	C	Q	P	N	V	A	S	F	G	L	T	E	Q	Q	A	R	N	E	G	Y	D	V	V	V	A	K	F	P	F	T	A	N	A	K	A	H	G	V	G	D
Template Known Secondary structure		.	.	S		S																	T									G	G	G	S					.		S	S	S															T	T										G	G	G								T
Template Predicted Secondary structure		.	.																																					.
Template SS confidence
				314	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.		350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390
		341	.	.	.	.	.	.	.	.	350		.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.
Predicted Secondary structure												.
Query SS confidence												.
Query Sequence		R	Q	G	M	V	A	R	G	V	D	.	D	A	D	Q	L	R	A	F	V	V	S	E	D	R	M	K	E	A	F	G	L	L	K	T	L	P	M
Query Conservation												.
Alig confidence												.																							.
Template Conservation																																			.
Template Sequence		P	S	G	F	V	K	L	V	A	D	A	K	H	G	E	L	L	G	G	H	L	V	G	H	D	V	A	E	L	L	P	E	L	.	T	L	A	Q
Template Known Secondary structure												T	T	T	T										T	T	G	G	G	G					.
Template Predicted Secondary structure																																			.
Template SS confidence
		391	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.		.	.	.	.