Phyre 2 alignment of P37596 with c1djnB

Job Description P37596
Confidence 99.97% Date Thu Jan 5 11:55:42 GMT 2012

Rank 59 Aligned Residues 293

% Identity 15% Template c1djnB_

PDB info PDB header:oxidoreductase Chain: B: PDB Molecule:trimethylamine dehydrogenase; PDBTitle: structural and biochemical characterization of recombinant wild type2 trimethylamine dehydrogenase from methylophilus methylotrophus (sp.3 w3a1)

Resolution 2.20 Å

	Insertion relative to template
	Deletion relative to template
	Catalytic residue from the CSA

Detailed help on interpreting your alignment

	2	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.
Predicted Secondary structure
Query SS confidence
Query Sequence	S	N	G	I	V	I	I	G	S	G	F	A	A	R	Q	L	V	K	N	I	R	K	Q	D	A	T	I	P	L	T	L	I	A	A	D	S	M	D	E	Y	N	K	P	D	L	S	H	V	I	S	Q	G	Q	R	A	D	D	L	T	R	Q	T	A	G	E	F	A	E	Q	F	N	L	H	L	F	P	Q	T	W	V
Query Conservation
Alig confidence																										.	.															.																													.	.	.	.
Template Conservation																										.	.															.																													.	.	.	.
Template Sequence	K	D	S	V	L	I	V	G	A	G	P	S	G	S	E	A	A	R	V	L	M	E	S	G	Y	.	.	T	V	H	L	T	D	T	A	E	K	I	G	G	H	.	L	N	Q	V	A	A	L	P	G	L	G	E	W	S	Y	H	R	D	Y	R	E	T	Q	I	T	K	L	L	.	.	.	.	K	K	N	K	E	S
Template Known Secondary structure										S													T	T		.	.							S	S	S	S	T	T	T	T	.					T	T	S	T	T		G	G	G	G															.	.	.	.		T		T	T
Template Predicted Secondary structure																										.	.															.																													.	.	.	.
Template SS confidence
	389	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.			.	.	.	.	.	.	420	.	.	.	.	.	.	.		.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.					.	.	.	.	460	.

	82	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.								.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.			150	.	.
Predicted Secondary structure																																									.	.	.	.	.	.	.																													.	.
Query SS confidence																																									.	.	.	.	.	.	.																													.	.
Query Sequence	T	D	I	D	A	E	A	R	V	V	K	S	Q	N	N	Q	W	Q	Y	D	K	L	V	L	A	T	G	A	S	A	F	V	P	P	V	P	G	R	E	L	.	.	.	.	.	.	.	M	L	T	L	N	S	Q	Q	E	Y	R	A	C	E	T	Q	L	R	D	A	R	R	V	L	I	V	G	G	.	.	G	L	I
Query Conservation																																									.	.	.	.	.	.	.																													.	.
Alig confidence																																									.	.	.	.	.	.	.																													.	.
Template Conservation
Template Sequence	Q	L	A	L	G	Q	K	P	M	T	A	D	D	V	L	Q	Y	G	A	D	K	V	I	I	A	T	G	A	R	W	N	T	D	G	T	N	C	L	T	H	D	P	I	P	G	A	D	A	S	L	P	D	Q	L	T	P	E	Q	V	M	D	G	K	K	K	I	G	K	R	V	V	I	L	N	A	D	T	Y	F	M
Template Known Secondary structure					S											T	S			S												S	S				T	T	T	S	S			T	T			T	T	S	T	T										T		S				S										S	S
Template Predicted Secondary structure
Template SS confidence
	462	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.

	153	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.
Predicted Secondary structure																																																																			.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																																																			.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence	G	S	E	L	A	M	D	F	C	R	A	G	K	A	V	T	L	I	D	N	A	A	S	I	L	A	S	L	M	P	P	E	V	S	S	R	L	Q	H	R	L	T	E	M	G	V	H	L	L	L	K	S	Q	L	Q	G	L	E	K	T	D	S	G	I	Q	A	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Conservation																																																																			.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																											.																																								.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																											.
Template Sequence	A	P	S	L	A	E	K	L	A	T	A	G	H	E	V	T	I	V	S	G	V	H	L	A	N	Y	.	M	H	F	T	L	E	Y	P	N	M	M	R	R	L	H	E	L	H	V	E	E	L	G	D	H	F	C	S	R	I	E	P	G	R	M	E	I	Y	N	I	W	G	D	G	S	K	R	T	Y	R	G	P	G
Template Known Secondary structure											T	T								S	S		T	T	T		.				T	T												T	T						S								T	T							T	T		S		S							T	T
Template Predicted Secondary structure																											.
Template SS confidence
	542	.	.	.	.	.	.	.	550	.	.	.	.	.	.	.	.	.	560	.	.	.	.	.	.	.		.	.	570	.	.	.	.	.	.	.	.	.	580	.	.	.	.	.	.	.	.	.	590	.	.	.	.	.	.	.	.	.	600	.	.	.	.	.	.	.	.	.	610	.	.	.	.	.	.	.	.	.	620

						219	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.
Predicted Secondary structure	.	.	.	.	.
Query SS confidence	.	.	.	.	.
Query Sequence	.	.	.	.	.	T	L	D	R	Q	R	N	I	E	V	D	A	V	I	A	A	T	G	L	R	P	E	T	A	L	A	R	R	A	G	L	T	I	N	R	G	V	C	V	D	S	Y	L	Q	T	S	N	T	D	I	Y	A	L	G	D	C	A	E	I	N	G	Q	V	L	P	F	L	Q	P	I	Q	L	S	A	M
Query Conservation	.	.	.	.	.
Alig confidence	.	.	.	.	.																														.	.	.	.	.	.																								.	.	.	.	.
Template Conservation																																			.	.	.	.	.	.																								.	.	.	.	.
Template Sequence	V	S	P	R	D	A	N	T	S	H	R	W	I	E	F	D	S	L	V	L	V	T	G	R	H	S	E	C	T	L	W	N	E	L	.	.	.	.	.	.	K	A	R	E	S	E	W	A	E	N	D	I	K	G	I	Y	L	I	G	D	A	E	A	.	.	.	.	.	P	R	L	I	A	D	A	T	F	T	G	H
Template Known Secondary structure	S		S	S												S						S													.	.	.	.	.	.			T	G	G	G	T	G	G	G	T								G	G	G	T	S	.	.	.	.	.
Template Predicted Secondary structure																																			.	.	.	.	.	.																								.	.	.	.	.
Template SS confidence
	621	.	.	.	.	.	.	.	.	630	.	.	.	.	.	.	.	.	.	640	.	.	.	.	.	.	.	.	.	650	.	.	.	.							.	.	.	.	.	660	.	.	.	.	.	.	.	.	.	670	.	.	.	.	.	.	.						.	.	680	.	.	.	.	.	.	.	.	.

	294	.	.	.	.	.	300					.	.	.	.	.	.	.	.	.	310	.	.	.
Predicted Secondary structure								.	.	.	.
Query SS confidence								.	.	.	.
Query Sequence	V	L	A	K	N	L	L	.	.	.	.	G	N	N	T	P	L	K	L	P	A	M	L	V
Query Conservation								.	.	.	.
Alig confidence								.	.	.	.
Template Conservation
Template Sequence	R	V	A	R	E	I	E	E	A	N	P	Q	I	A	I	P	Y	K	R	E	T	I	A	W
Template Known Secondary structure					T	T	T	S	S		T	T	S											T
Template Predicted Secondary structure
Template SS confidence
	690	.	.	.	.	.	.	.	.	.	700	.	.	.	.	.	.	.	.	.	710	.	.	.

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server

Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]

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Lawrence Kelley, Benjamin Jefferys
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