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Job DescriptionP68767
Confidence100.00%DateThu Jan 5 12:11:12 GMT 2012
Rank3Aligned Residues488
% Identity49%Templatec3jruB_
PDB info PDB header:hydrolaseChain: B: PDB Molecule:probable cytosol aminopeptidase; PDBTitle: crystal structure of leucyl aminopeptidase (pepa) from xoo0834,2 xanthomonas oryzae pv. oryzae kacc10331
Resolution2.60 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   1........10.........20.........30.........40.........50.........60.........70.........80
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Query Sequence  MEFSVKSGSPEKQRSACIVVGVFEPRRLSPIAEQLDKISDGYISALLRRGELEGKPGQTLLLHHVPNVLSERILLIGCGK
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Template Sequence  LQFTLNQDAPASAAVDCIVVGAFADKTLSPAAQALDSASQGRLTALLARGDVAGKTGSTTLLHDLPGVAAPRVLVVGLGD
Template Known Secondary structure 



TTT

SS
TTS
B
TTST
S

STT


TT
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   3......10.........20.........30.........40.........50.........60.........70.........80..
 
   81........90.........100.........110.........120.........130.........140.........150.........160
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Query Sequence  ERELDERQYKQVIQKTINTLNDTGSMEAVCFLTELHVKGRNNYWKVRQAVETAKETLYSFDQLKTNKSEPRRPLRKMVFN
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Template Sequence  AGKFGVAPYLKAIGDATRALKTGAVGTALLTLTELTVKARDAAWNIRQAVTVSDHAAYRYTATLGKKKVDETGLTTLAIA
Template Known Secondary structure  GGG
SSSSS
S
GGGS

TT





TT
SS





S

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   83......90.........100.........110.........120.........130.........140.........150.........160..
 
   161........170.........180.........190.........200.........210.........220.........230.........240
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Query Sequence  VPTRRELTSGERAIQHGLAIAAGIKAAKDLGNMPPNICNAAYLASQARQLADSYSKNVITRVIGEQQMKELGMHSYLAVG
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Template Sequence  GD. . . . . . . DARALAVGVATAEGVEFARELGNLPPNYCTPAYLADTAAAFAGKFP. GAEAEILDEAQMEALGMGSLLSVA
Template Known Secondary structure  B
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S
TTTS
TTST.T
TT
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   163. .....170.........180.........190.........200.........210 .........220.........230....
 
   241........250.........260.........270.........280.........290.........300.........310.........320
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Query Sequence  QGSQNESLMSVIEYKGNASEDARPIVLVGKGLTFDSGGISIKPSEGMDEMKYDMCGAAAVYGVMRMVAELQLPINVIGVL
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Template Sequence  RGSANRPRLIVLKWNGGGDA. . RPYVLVGKGITFDTGGVNLKTQGGIEEMKYDMCGGATVIGTFVATVKAELPINLVVVV
Template Known Secondary structure  T
SS

TTTTS..




TTS


SS
GGGGGGGGTT
SS
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   235....240.........250.... .....260.........270.........280.........290.........300.........310..
 
   321........330.........340.........350.........360.........370.........380.........390.........400
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Query Sequence  AGCENMPGGRAYRPGDVLTTMSGQTVEVLNTDAEGRLVLCDVLTYVERFEPEAVIDVATLTGACVIALGHHITGLMANHN
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Template Sequence  PAVENAIDGNAYRPSDVITSMSGKTIEVGNTDAEGRLILCDALTYAERFNPEALVDVATLTGACMVALGHQTAGLMSKHD
Template Known Secondary structure 

STT


TT

TTS

S
TT

GGG

S


TTT
S
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   313......320.........330.........340.........350.........360.........370.........380.........390..
 
   401........410.........420.........430.........440.........450.........460.........470.........480
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Query Sequence  PLAHELIAASEQSGDRAWRLPLGDEYQEQLESNFADMANIGGRPGGAITAGCFLSRFTRKYNWAHLDIAGTAWRSGKAKG
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Template Sequence  DLANELLAAGEHVFDRAWRLPLWDEYQGLLDSTFADVYNIGGRWGGAITAGCFLSRFTENQRWAHLDIAGVASDEGKRGM
Template Known Secondary structure  TT





GGGGGGG

SSSSS


SS
TT
TTS

TTTSB
SSTT

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   393......400.........410.........420.........430.........440.........450.........460.........470..
 
   481........490........
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Query Sequence  ATGRPVALLAQFLLNRAG
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Template Sequence  ATGRPVGLLTQWLLDRAA
Template Known Secondary structure  B

TT
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   473......480.........490
 
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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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