Job Description P68767 Confidence 22.33% Date Thu Jan 5 12:11:12 GMT 2012 Rank 116 Aligned Residues 155 % Identity 9% Template c3gpqA_ PDB info PDB header:viral protein/rna Chain: A: PDB Molecule:non-structural protein 3; PDBTitle: crystal structure of macro domain of chikungunya virus in complex with2 rna Resolution 2.00 Å

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		3	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		F	S	V	K	S	G	S	P	E	K	Q	R	S	A	C	I	V	V	G	V	F	E	P	R	R	L	S	P	I	A	E	Q	L	D	K	I	S	D	G	Y	I	S	A	L	L	R	R	G	E	L	E	G	K	P	G	Q	T	L	L	L	H	H	V	P	N	V	L	S	E	R	I	L	L	I	G	C	G	K	E	R
Query Conservation
Alig confidence																																										.	.	.	.	.
Template Conservation																																										.	.	.	.	.
Template Sequence		Y	R	V	K	R	M	D	I	A	K	N	D	E	E	C	V	V	N	A	A	N	P	R	G	L	P	G	D	G	V	C	K	A	V	Y	K	K	W	P	E	.	.	.	.	.	S	F	K	N	S	A	T	P	V	G	T	A	K	T	V	M	C	G	T	Y	P	V	I	H	A	V	G	P	N	F	S	N	Y	S	E
Template Known Secondary structure							S		G	G	G			S	S								T	T					S											G	G	.	.	.	.	.	G	G	T	T					T	T								T	T											T	T	T	S
Template Predicted Secondary structure																																										.	.	.	.	.
Template SS confidence
		4	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.						.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.
		83	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		E	L	D	E	R	Q	Y	K	Q	V	I	Q	K	T	I	N	T	L	N	D	T	G	S	M	E	A	V	C	F	L	T	E	L	H	V	K	G	R	N	N	Y	W	K	V	R	Q	A	V	E	T	A	K	E	T	L	Y	S	F	D	Q	L	K	T	N	K	S	E	P	R	R	P	L	R	K	M	V	F	N	V	P
Query Conservation
Alig confidence																																																								.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																																								.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		S	E	G	D	R	E	L	A	A	A	Y	R	E	V	A	K	E	V	T	R	L	G	V	N	S	V	A	I	P	L	L	S	T	G	V	Y	S	G	G	K	D	R	L	T	Q	S	L	N	H	L	F	T	A	M	.	.	.	.	.	.	.	.	.	.	.	.	.	.	D	S	T	D	A	D	V	V	I	Y	C	R
Template Known Secondary structure																							T		S							T	T		G	G	G	S	T	T	S															.	.	.	.	.	.	.	.	.	.	.	.	.	.	T	T	S		S							S
Template Predicted Secondary structure																																																								.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		79	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.															.	.	.	.	.	.	.	140	.	.	.	.
		163	.	.	.	.	.	.	170	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		T	R	R	E	L	T	S	G	E	R	A	I	Q	H
Query Conservation
Alig confidence
Template Conservation
Template Sequence		D	K	E	W	E	K	K	I	S	E	A	I	Q	M
Template Known Secondary structure															T
Template Predicted Secondary structure
Template SS confidence
		145	.	.	.	.	150	.	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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