Job Description P68767 Confidence 70.59% Date Thu Jan 5 12:11:12 GMT 2012 Rank 40 Aligned Residues 128 % Identity 9% Template c1vgyB_ PDB info PDB header:structural genomics, unknown function Chain: B: PDB Molecule:succinyl-diaminopimelate desuccinylase; PDBTitle: crystal structure of succinyl diaminopimelate desuccinylase Resolution 1.90 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		182	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.						.
Predicted Secondary structure																																																																												.	.	.	.	.
Query SS confidence																																																																												.	.	.	.	.
Query Sequence		A	G	I	K	A	A	K	D	L	G	N	M	P	P	N	I	C	N	A	A	Y	L	A	S	Q	A	R	Q	L	A	D	S	Y	S	K	N	V	I	T	R	V	I	G	E	Q	Q	M	K	E	L	G	M	H	S	Y	L	A	V	G	Q	G	S	Q	N	E	S	L	M	S	V	I	E	Y	K	.	.	.	.	.	G
Query Conservation																																																																												.	.	.	.	.
Alig confidence																																														.	.	.	.	.	.	.									.															.	.	.	.	.
Template Conservation																																														.	.	.	.	.	.	.									.
Template Sequence		Q	S	L	E	L	A	K	E	L	I	S	R	P	S	V	T	P	D	D	R	D	C	Q	K	L	X	A	E	R	L	H	K	I	G	F	A	A	E	E	X	H	F	G	N	.	.	.	.	.	.	.	T	K	N	I	W	L	R	R	.	G	T	K	A	P	V	V	C	F	A	G	H	T	D	V	V	P	T	G	P
Template Known Secondary structure												T	S			B	T	T			T	T											T	T	T								B	T	T	.	.	.	.	.	.	.	B								.		S	S	S	S										B					S
Template Predicted Secondary structure																																														.	.	.	.	.	.	.									.
Template SS confidence
		5	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.								.	50	.	.	.	.	.	.		.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.
		257	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.			.	.	.	.	.	.	320	.	.	.	.	.	.	.	.
Predicted Secondary structure																																																											.	.
Query SS confidence																																																											.	.
Query Sequence		N	A	S	E	D	A	R	P	I	V	L	V	G	K	G	L	T	F	D	S	G	G	I	S	I	K	P	S	E	G	M	D	E	M	K	Y	D	M	C	G	A	A	A	V	Y	G	V	M	R	M	V	A	E	L	Q	L	P	.	.	I	N	V	I	G	V	L	A	G	C	E	N	M	P	G
Query Conservation																																																											.	.
Alig confidence																									.	.	.	.	.	.	.	.	.	.	.																								.	.
Template Conservation																									.	.	.	.	.	.	.	.	.	.	.
Template Sequence		V	E	K	W	D	S	P	P	F	E	P	A	E	R	D	G	R	L	Y	G	R	G	A	.	.	.	.	.	.	.	.	.	.	.	A	D	X	K	T	S	I	A	C	F	V	T	A	C	E	R	F	V	A	K	H	P	N	H	Q	G	S	I	A	L	L	I	T	S	D	E	E	G	D	A
Template Known Secondary structure		G	G	G	S	S	S		T	T	S					T	T				S	T	T	T	.	.	.	.	.	.	.	.	.	.	.	T	T	T																			T	T		S	S								S		S	S	S
Template Predicted Secondary structure																									.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		77	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.												100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions