Job Description P0ACD8 Confidence 100.00% Date Thu Jan 5 11:17:58 GMT 2012 Rank 6 Aligned Residues 526 % Identity 46% Template d1yq9h1 SCOP info HydB/Nqo4-like HydB/Nqo4-like Nickel-iron hydrogenase, large subunit Resolution 2.35

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		18	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		R	L	V	V	D	P	I	T	R	I	E	G	H	M	R	C	E	V	N	I	N	D	Q	N	V	I	T	N	A	V	S	C	G	T	M	F	R	G	L	E	I	I	L	Q	G	R	D	P	R	D	A	W	A	F	V	E	R	I	C	G	V	C	T	G	V	H	A	L	A	S	V	Y	A	I	E	D	A	I	G	I
Query Conservation
Alig confidence																								.
Template Conservation																								.
Template Sequence		K	I	V	V	D	P	I	T	R	I	E	G	H	L	R	I	E	V	E	V	E	G	.	G	K	I	K	N	A	W	S	M	S	T	L	F	R	G	L	E	M	I	L	K	G	R	D	P	R	D	A	Q	H	F	T	Q	R	A	C	G	V	C	T	Y	V	H	A	L	A	S	V	R	A	V	D	N	C	V	G	V
Template Known Secondary structure							S			S	S	B	S										T	.	T																				T	T	S		G	G	G							T	T		S	S	S	T	T															T
Template Predicted Secondary structure																								.
Template SS confidence
		8	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.		30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.
		98	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		K	V	P	D	N	A	N	I	I	R	N	I	M	L	A	T	L	W	C	H	D	H	L	V	H	F	Y	Q	L	A	G	M	D	W	I	D	V	L	D	A	L	K	A	D	P	R	K	T	S	E	L	A	Q	S	L	S	S	W	P	K	S	S	P	G	Y	F	F	D	V	Q	N	R	L	K	K	F	V	E	G	G
Query Conservation
Alig confidence																																																								.
Template Conservation																																																								.
Template Sequence		K	I	P	E	N	A	T	L	M	R	N	L	T	M	G	A	Q	Y	M	H	D	H	L	V	H	F	Y	H	L	H	A	L	D	W	V	N	V	A	N	A	L	N	A	D	P	A	K	A	A	R	L	A	N	D	.	L	S	P	R	K	T	T	T	E	S	L	K	A	V	Q	A	K	V	K	A	L	V	E	S	G
Template Known Secondary structure																														T	T	G	G	G	T			S	G	G	G	G	G													.			S	S																				T	T
Template Predicted Secondary structure																																																								.
Template SS confidence
		87	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140		.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.
		178	.	180	.	.	.	.	.	.	.			.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.		.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.
Predicted Secondary structure												.	.																																															.
Query SS confidence												.	.																																															.
Query Sequence		Q	L	G	I	F	R	N	G	Y	W	.	.	G	H	P	Q	Y	K	L	P	P	E	A	N	L	M	G	F	A	H	Y	L	E	A	L	D	F	Q	R	E	I	V	K	I	H	A	V	F	G	G	K	N	P	H	P	N	W	I	.	V	G	G	M	P	C	A	I	N	I	D	E	S	G	A	V	G	A	V	N	M
Query Conservation												.	.																																															.
Alig confidence												.	.																																															.													.	.	.	.	.	.	.	.	.
Template Conservation																																																																									.	.	.	.	.	.	.	.	.
Template Sequence		Q	L	G	I	F	T	N	A	Y	F	L	G	G	H	P	A	Y	V	L	P	A	E	V	D	L	I	A	T	A	H	Y	L	E	A	L	R	V	Q	V	K	A	A	R	A	M	A	I	F	G	A	K	N	P	H	T	Q	F	T	V	V	G	G	C	T	N	Y	D	S	L	R	P	.	.	.	.	.	.	.	.	.
Template Known Secondary structure				G	G	G	T	T		T	T	T	T			T	T																																		S	S	S	S	S						T	T					G	G	G	G	S		.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																																																																									.	.	.	.	.	.	.	.	.
Template SS confidence
		166	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.
		255	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		E	R	L	N	L	V	Q	S	I	I	T	R	T	A	D	F	I	N	N	V	M	I	P	D	A	L	A	I	G	Q	F	N	K	P	W	S	E	I	G	T	G	L	S	D	K	C	V	L	S	Y	G	A	F	P	D	I	A	N	D	F	G	E	K	S	L	L	M	P	G	G	A	V	I	N	G	D	F	N	N	V
Query Conservation
Alig confidence																																									.	.	.																					.	.																.
Template Conservation																																									.	.	.																					.	.																.
Template Sequence		E	R	I	A	E	F	R	K	L	Y	K	E	V	R	E	F	I	E	Q	V	Y	I	T	D	L	L	A	V	A	G	F	Y	K	N	W	A	G	I	G	.	.	.	K	T	S	N	F	L	T	C	G	E	F	P	T	D	E	Y	D	L	N	S	.	.	R	Y	T	P	Q	G	V	I	W	G	N	D	L	S	K	.
Template Known Secondary structure																					T												T	G	G	G	G	G	S	S	.	.	.										B			S	S	T	T		G	G	G	.	.	S	S	B							T	T		T	T		.
Template Predicted Secondary structure																																									.	.	.																					.	.																.
Template SS confidence
		237	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.				.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.			.	.	.	.	300	.	.	.	.	.	.	.	.	.	310
		335	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	P	V	D	L	V	D	P	Q	Q	V	Q	E	F	V	D	H	A	W	Y	R	Y	P	N	D	Q	V	G	R	H	P	F	D	G	I	T	D	P	W	Y	N	P	G	D	V	K	G	S	D	T	N	I	Q	Q	L	N	E	Q	E	R	Y	S	W	I	K	A	P	R	W	R	G	N	A	M	E	V	G	P	L	A
Query Conservation
Alig confidence		.	.																				.	.	.																					.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation		.	.																				.	.	.																					.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		.	.	V	D	D	F	N	P	D	L	I	E	E	H	V	K	Y	S	W	Y	E	.	.	.	G	A	D	A	H	H	P	Y	K	G	V	T	K	P	K	W	T	E	F	H	.	.	.	.	.	.	.	.	.	.	.	.	G	E	D	R	Y	S	W	M	K	A	P	R	Y	K	G	E	A	F	E	V	G	P	L	A
Template Known Secondary structure		.	.		B				G	G	G						T	T	T	T	B	S	.	.	.	S	S			B		G	G	G					B					T	T	.	.	.	.	.	.	.	.	.	.	.	.	G	G	G				S	S						T	T	B			B		S
Template Predicted Secondary structure		.	.																				.	.	.																					.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
				311	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.				330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.													350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.
		415	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		R	T	L	I	A	Y	H	K	G	D	A	A	T	V	E	S	V	D	R	M	M	S	A	L	N	L	P	L	S	G	I	Q	S	T	L	G	R	I	L	C	R	A	H	E	A	Q	W	A	A	G	K	L	Q	Y	F	F	D	K	L	M	T	N	L	K	N	G	N	L	A	T	A	S	T	E	K	W	E	P	A	T
Query Conservation
Alig confidence																																																																													.	.	.	.	.
Template Conservation																																																																													.	.	.	.	.
Template Sequence		S	V	L	V	A	Y	A	K	K	H	E	P	T	V	K	A	V	D	L	V	L	K	T	L	G	V	G	P	E	A	L	F	S	T	L	G	R	T	A	A	R	G	I	Q	C	L	T	A	A	Q	E	V	E	V	W	L	D	K	L	E	A	N	V	K	A	G	K	D	D	L	Y	T	D	W	Q	.	.	.	.	.
Template Known Secondary structure									T	T																T			G	G	G	G	S	S																																T	T					B					.	.	.	.	.
Template Predicted Secondary structure																																																																													.	.	.	.	.
Template SS confidence
		374	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.
		495	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.	.	.	.	560	.	.	.	.	.	.	.	.	.	570	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		W	P	T	E	C	R	G	V	G	F	T	E	A	P	R	G	A	L	G	H	W	A	A	I	R	D	G	K	I	D	L	Y	Q	C	V	V	P	T	T	W	N	A	S	P	R	D	P	K	G	Q	I	G	A	Y	E	A	A	L	M	N	T	K	M	A	I	P	E	Q	P	L	E	I	L	R	T	L	H	S	F	D
Query Conservation
Alig confidence
Template Conservation
Template Sequence		Y	P	T	E	S	Q	G	V	G	F	V	N	A	P	R	G	M	L	S	H	W	I	V	Q	R	G	G	K	I	E	N	F	Q	L	V	V	P	S	T	W	N	L	G	P	R	C	A	E	G	K	L	S	A	V	E	Q	A	L	I	G	T	P	I	A	D	P	K	R	P	V	E	I	L	R	T	V	H	S	Y	D
Template Known Secondary structure				S											T	T											T	T																				T	T											T	T		B		S		T	T	S											T
Template Predicted Secondary structure
Template SS confidence
		449	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.
		575	.	.	.	.	580	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		P	C	L	A	C	S	T	H
Query Conservation
Alig confidence
Template Conservation
Template Sequence		P	C	I	A	C	G	V	H
Template Known Secondary structure			B
Template Predicted Secondary structure
Template SS confidence
		529	530	.	.	.	.	.	.