Job Description P0ACD8 Confidence 100.00% Date Thu Jan 5 11:17:58 GMT 2012 Rank 2 Aligned Residues 532 % Identity 45% Template d1e3db_ SCOP info HydB/Nqo4-like HydB/Nqo4-like Nickel-iron hydrogenase, large subunit Resolution 1.8

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		12	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.
Predicted Secondary structure
Query SS confidence
Query Sequence		I	N	N	A	G	R	R	L	V	V	D	P	I	T	R	I	E	G	H	M	R	C	E	V	N	I	N	D	Q	N	V	I	T	N	A	V	S	C	G	T	M	F	R	G	L	E	I	I	L	Q	G	R	D	P	R	D	A	W	A	F	V	E	R	I	C	G	V	C	T	G	V	H	A	L	A	S	V	Y	A	I
Query Conservation
Alig confidence																														.
Template Conservation																														.
Template Sequence		R	S	N	Y	T	G	P	I	V	V	D	P	L	T	R	I	E	G	H	L	R	I	E	V	E	V	E	G	.	G	V	I	K	E	A	R	S	C	A	T	L	F	R	G	I	E	T	I	L	K	G	R	D	P	R	D	A	Q	H	F	T	Q	R	T	C	G	V	C	T	Y	T	H	A	L	A	S	T	R	C	L
Template Known Secondary structure												S	S			S	S	B	S										T	.	T																				T	T	S		G	G	G							T	T		S	T	T	T	T
Template Predicted Secondary structure																														.
Template SS confidence
		8	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.		.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.
		92	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.
Predicted Secondary structure
Query SS confidence
Query Sequence		E	D	A	I	G	I	K	V	P	D	N	A	N	I	I	R	N	I	M	L	A	T	L	W	C	H	D	H	L	V	H	F	Y	Q	L	A	G	M	D	W	I	D	V	L	D	A	L	K	A	D	P	R	K	T	S	E	L	A	Q	S	L	S	S	W	P	K	S	S	P	G	Y	F	F	D	V	Q	N	R	L	K
Query Conservation
Alig confidence																																																																								.
Template Conservation																																																																								.
Template Sequence		E	D	A	I	N	K	P	I	P	A	N	A	T	Y	I	R	N	L	V	L	G	N	Q	F	M	H	D	H	L	V	H	F	Y	H	L	H	A	L	D	F	V	D	V	T	S	A	L	L	A	D	P	A	K	A	A	K	L	A	N	S	I	S	P	R	K	A	T	T	E	E	.	F	A	A	V	Q	A	K	L	K
Template Known Secondary structure																																				T	T	G	G	G	T			T	T	G	G	G	G	S														S	S							.
Template Predicted Secondary structure																																																																								.
Template SS confidence
		87	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.		.	.	.	160	.	.	.	.	.
		172	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.			.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.		.	.	.	.	.	.	240	.	.	.	.	.	.	.	.
Predicted Secondary structure																		.	.																																															.
Query SS confidence																		.	.																																															.
Query Sequence		K	F	V	E	G	G	Q	L	G	I	F	R	N	G	Y	W	.	.	G	H	P	Q	Y	K	L	P	P	E	A	N	L	M	G	F	A	H	Y	L	E	A	L	D	F	Q	R	E	I	V	K	I	H	A	V	F	G	G	K	N	P	H	P	N	W	I	.	V	G	G	M	P	C	A	I	N	I	D	E	S	G	A
Query Conservation																		.	.																																															.
Alig confidence																		.	.																																															.													.	.	.
Template Conservation																																																																															.	.	.
Template Sequence		T	F	V	A	S	G	Q	L	G	P	F	T	N	A	Y	F	L	G	G	H	E	G	Y	Y	M	D	P	E	A	N	L	V	C	T	A	H	Y	L	Q	A	L	R	A	Q	V	E	V	A	K	G	M	A	V	F	G	A	K	N	P	H	T	Q	F	T	V	A	G	G	V	T	C	Y	E	A	L	T	P	.	.	.
Template Known Secondary structure						T	S			G	G	G	T	T		T	T	T	T			T	T																																		S		S	S	S						T	T					G	G	G	G	S		.	.	.
Template Predicted Secondary structure																																																																															.	.	.
Template SS confidence
		166	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.
		249	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		V	G	A	V	N	M	E	R	L	N	L	V	Q	S	I	I	T	R	T	A	D	F	I	N	N	V	M	I	P	D	A	L	A	I	G	Q	F	N	K	P	W	S	E	I	G	T	G	L	S	D	K	C	V	L	S	Y	G	A	F	P	D	I	A	N	D	F	G	E	K	S	L	L	M	P	G	G	A	V	I	N
Query Conservation
Alig confidence		.	.	.	.	.	.																																								.	.	.
Template Conservation		.	.	.	.	.	.																																								.	.	.
Template Sequence		.	.	.	.	.	.	E	R	I	K	Q	F	R	E	L	Y	V	K	A	R	A	F	I	E	E	V	Y	I	P	D	L	L	L	V	A	S	Y	Y	K	D	W	G	K	I	G	.	.	.	G	T	N	N	F	M	A	F	G	E	F	P	A	P	G	G	E	R	D	L	N	S	R	W	Y	K	P	G	V	I	Y	D
Template Known Secondary structure		.	.	.	.	.	.																				T													G	G	G	G	G	S	S	.	.	.			S											T	T		T	T		G	G	G	S	S								T
Template Predicted Secondary structure		.	.	.	.	.	.																																								.	.	.
Template SS confidence
								243	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.				.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.
		329	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		G	D	F	N	N	V	L	P	V	D	L	V	D	P	Q	Q	V	Q	E	F	V	D	H	A	W	Y	R	Y	P	N	D	Q	V	G	R	H	P	F	D	G	I	T	D	P	W	Y	N	P	G	D	V	K	G	S	D	T	N	I	Q	Q	L	N	E	Q	E	R	Y	S	W	I	K	A	P	R	W	R	G	N	A	M
Query Conservation
Alig confidence							.	.	.																			.	.	.	.																					.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation							.	.	.																			.	.	.	.																					.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		R	K	V	G	S	.	.	.	V	Q	P	F	D	P	S	K	I	E	E	H	V	R	H	S	W	Y	.	.	.	.	E	G	K	A	R	A	P	F	E	G	E	T	N	P	H	F	T	F	M	G	.	.	.	.	.	.	.	.	.	.	.	.	D	T	D	K	Y	S	W	N	K	A	P	R	Y	D	G	H	A	V
Template Known Secondary structure		T		G	G	G	.	.	.		B				G	G	G						T	T	B	T	B	.	.	.	.		S			B		G	G	G					B					T	T	.	.	.	.	.	.	.	.	.	.	.	.		S	S	S		B	S	S						T	T	B
Template Predicted Secondary structure							.	.	.																			.	.	.	.																					.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		314	.	.	.	.				.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.					.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.													.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.
		409	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		E	V	G	P	L	A	R	T	L	I	A	Y	H	K	G	D	A	A	T	V	E	S	V	D	R	M	M	S	A	L	N	L	P	L	S	G	I	Q	S	T	L	G	R	I	L	C	R	A	H	E	A	Q	W	A	A	G	K	L	Q	Y	F	F	D	K	L	M	T	N	L	K	N	G	N	L	A	T	A	S	T	E
Query Conservation
Alig confidence
Template Conservation
Template Sequence		E	T	G	P	L	A	Q	M	L	V	A	Y	G	H	N	H	K	T	I	K	P	T	I	D	A	V	L	G	K	L	N	L	G	P	E	A	L	F	S	T	L	G	R	T	A	A	R	G	I	Q	T	L	V	I	A	Q	Q	M	E	N	W	L	N	E	Y	E	N	N	I	V	K	D	K	Q	I	V	E	D	Y	A
Template Known Secondary structure		B		S											T	T		T	T													T			G	G	G	G	S	S																														T	T	T					B
Template Predicted Secondary structure
Template SS confidence
		375	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.
		489	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.	.	.	.	560	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		K	W	E	P	A	T	W	P	T	E	C	R	G	V	G	F	T	E	A	P	R	G	A	L	G	H	W	A	A	I	R	D	G	K	I	D	L	Y	Q	C	V	V	P	T	T	W	N	A	S	P	R	D	P	K	G	Q	I	G	A	Y	E	A	A	L	M	N	T	K	M	A	I	P	E	Q	P	L	E	I	L	R
Query Conservation
Alig confidence			.	.	.	.	.	.
Template Conservation			.	.	.	.	.	.
Template Sequence		V	.	.	.	.	.	.	P	T	S	A	R	G	V	G	F	A	D	V	S	R	G	G	L	S	H	W	M	T	I	E	D	G	K	I	D	N	F	Q	L	V	V	P	T	T	W	N	L	G	P	R	D	D	K	G	V	P	S	A	A	E	A	A	L	V	G	T	P	V	A	D	P	K	R	P	V	E	I	L	R
Template Known Secondary structure			.	.	.	.	.	.		S	S										T	T											T	T															T					T	T											T	T		B		S		T	T	S
Template Predicted Secondary structure			.	.	.	.	.	.
Template SS confidence
		455							.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.
		569	570	.	.	.	.	.	.	.	.	.	580	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		T	L	H	S	F	D	P	C	L	A	C	S	T	H
Query Conservation
Alig confidence
Template Conservation
Template Sequence		T	I	H	S	F	D	P	C	I	A	C	S	T	H
Template Known Secondary structure						T			B
Template Predicted Secondary structure
Template SS confidence
		529	530	.	.	.	.	.	.	.	.	.	540	.	.